NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42431.1 Public Homo sapiens 18 ARK2N 24 110 108 CCDS HistoryNCBI Gene:147339Re-query CCDS DB by CCDS ID:42431.1Re-query CCDS DB by GeneID:147339See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619301.4 ENSP00000480074.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619301.4Link to Ensembl Protein Viewer:ENSP00000480074.1Re-query CCDS DB by Nucleotide ID:ENST00000619301Re-query CCDS DB by Protein ID:ENSP00000480074
Original member Current member NCBI NM_001008239.3 NP_001008240.1 Accepted alive Link to Nucleotide Sequence:NM_001008239.3Link to Protein Sequence:NP_001008240.1Re-query CCDS DB by Nucleotide ID:NM_001008239Re-query CCDS DB by Protein ID:NP_001008240Link to BLAST:NP_001008240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008240.1 343 Q96B23-2 343 100% 0 0

Chromosomal Locations for CCDS 42431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46215881 46216595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46253697 46253823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46262929 46263118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGAAGATGGAGGAGGCAGTGGGAAAAGTTGAAGAACTCATTGAGTCCGAAGCCCCACCAAAAGCATCTG
AACAAGAGACAGCCAAGGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGC
GGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAG
TTAGCATCCACAGAGAGTGACAAGCCTACAACTGGCCGAGTTTATGAGAGTGACTCCTCTAATCACTGCA
TGCTTTCCCCTTCCTCTAGTGGTCACCTGGCTGATTCAGATACGTTGTCTTCCGCAGAAGAGAATGAACC
CTCTCAGGCAGAAACGGCGGTAGAAGGAGACCCTTCAGGAGTGTCTGGTGCCACAGTTGGGCGCAAGTCT
AGGCGGTCCCGATCTGAAAGTGAAACTTCCACTATGGCTGCCAAGAAAAACCGGCAATCCAGTGATAAAC
AGAATGGCCGAGTCGCCAAGGTTAAAGGTCATCGGAGCCAAAAGCACAAGGAGAGGATCAGGCTACTGAG
GCAGAAACGGGAGGCTGCTGCAAGGAAGAAATATAACCTGCTGCAGGACAGTAGTACCAGTGATAGTGAC
CTGACTTGTGACTCAAGCACGAGCTCATCAGATGATGATGAAGAGGTTTCAGGGAGCAGCAAGACAATCA
CTGCAGAGATACCAGGTCATTTGGATCCAGGATTCCTAGCAAGTGACAAAACATCTGCTGGCAATGCGCC
ACTCAATGAAGAAATTAACATTGCGTCTTCAGATAGTGAAGTAGAGATTGTGGGAGTTCAGGAACATGCA
AGGTGTGTTCATCCTCGAGGTGGTGTGATTCAGAGTGTTTCTTCATGGAAGCATGGCTCGGGCACGCAGT
ATGTTAGCACCAGGCAAACACAGTCATGGACTGCTGTGACTCCCCAGCAGACTTGGGCTTCACCAGCAGA
AGTTGTTGACCTTACCTTGGATGAGGATAGCAGGCGTAAATACCTACTGTAA

Translation (343 aa):
MKMEEAVGKVEELIESEAPPKASEQETAKEEDGSVELESQVQKDGVADSTVISSMPCLLMELRRDSSESQ
LASTESDKPTTGRVYESDSSNHCMLSPSSSGHLADSDTLSSAEENEPSQAETAVEGDPSGVSGATVGRKS
RRSRSESETSTMAAKKNRQSSDKQNGRVAKVKGHRSQKHKERIRLLRQKREAAARKKYNLLQDSSTSDSD
LTCDSSTSSSDDDEEVSGSSKTITAEIPGHLDPGFLASDKTSAGNAPLNEEINIASSDSEVEIVGVQEHA
RCVHPRGGVIQSVSSWKHGSGTQYVSTRQTQSWTAVTPQQTWASPAEVVDLTLDEDSRRKYLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH