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Report for CCDS42610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42610.1 Public Homo sapiens 19 LILRA6 24 110 108 CCDS HistoryNCBI Gene:79168Re-query CCDS DB by CCDS ID:42610.1Re-query CCDS DB by GeneID:79168See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 42610.1
This CCDS representation lacks full-length transcript support that is specifically derived from the annotated location. The represented exon combination is inferred from a mixture of partial best hit transcript alignments and paralogous transcript alignments, e.g., from the related LILRA2 locus.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42610.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396365.6 ENSP00000379651.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396365.6Link to Ensembl Protein Viewer:ENSP00000379651.2Re-query CCDS DB by Nucleotide ID:ENST00000396365Re-query CCDS DB by Protein ID:ENSP00000379651
Original member NCBI NM_024318.4 NP_077294.3 Updated not alive Link to Nucleotide Sequence:NM_024318.4Link to Protein Sequence:NP_077294.3Re-query CCDS DB by Nucleotide ID:NM_024318Re-query CCDS DB by Protein ID:NP_077294
Current member NCBI NM_024318.5 NP_077294.3 Accepted alive Link to Nucleotide Sequence:NM_024318.5Link to Protein Sequence:NP_077294.3Re-query CCDS DB by Nucleotide ID:NM_024318Re-query CCDS DB by Protein ID:NP_077294Link to BLAST:NP_077294.3

Chromosomal Locations for CCDS 42610.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54238953 54239089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54239901 54239951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54240274 54240576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54240831 54241127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54241576 54241878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54242026 54242310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54242519 54242554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54242718 54242751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGACCCCCACCCTCGCAGCCCTGCTCTGCCTAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAG
GGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCAT
CTGGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAGCCCTGGGAC
AGAAATAACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATAACAGAGCACCATGCGG
GGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGAT
GACAGGAGCCTATAGCAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATG
ACCCTCCAATGTGGCTCACAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCC
CCCGGACCCTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAA
CCCCAGCCACAGGTGGAGGTTCACATGCTATTACTATTATATGAACACCCCCCGGGTGTGGTCCCACCCC
AGTGACCCCCTGGAGATTCTGCCCTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTG
TCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTA
TAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAAC
TTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCTCCT
CCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGGACAGATCTATGACACCGTCTCCCT
GTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGTGGCAG
TTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG
CTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTA
CGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAGGA
CACTCTGGAGGCTCCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTGCCTCACACGCCAAGGATTACA
CAGTGGAGAATCTCATCCGCATGGGCATGGCAGGCTTGGTCCTGGTGTTCCTCGGGATTCTGTTATTTGA
GGCTCAGCACAGCCAGAGAAACCCCCAAGATGCAGCCGGGAGGTGA

Translation (481 aa):
MTPTLAALLCLGLSLGPRTHVQAGPFPKPTLWAEPGSVISWGSPVTIWCQGSLEAQEYRLDKEGSPEPWD
RNNPLEPKNKARFSIPSITEHHAGRYRCHYYSSAGWSEPSDPLELVMTGAYSKPTLSALPSPVVASGGNM
TLQCGSQKGYHHFVLMKEGEHQLPRTLDSQQLHSGGFQALFPVGPVNPSHRWRFTCYYYYMNTPRVWSHP
SDPLEILPSGVSRKPSLLTLQGPVLAPGQSLTLQCGSDVGYDRFVLYKEGERDFLQRPGQQPQAGLSQAN
FTLGPVSPSHGGQYRCYGAHNLSSEWSAPSDPLNILMAGQIYDTVSLSAQPGPTVASGENVTLLCQSWWQ
FDTFLLTKEGAAHPPLRLRSMYGAHKYQAEFPMSPVTSAHAGTYRCYGSYSSNPHLLSFPSEPLELMVSG
HSGGSSLPPTGPPSTPASHAKDYTVENLIRMGMAGLVLVFLGILLFEAQHSQRNPQDAAGR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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