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Report for CCDS4270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4270.1 Public Homo sapiens 5 RNF14 24 110 108 CCDS HistoryNCBI Gene:9604Re-query CCDS DB by CCDS ID:4270.1Re-query CCDS DB by GeneID:9604See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347642.7 ENSP00000324956.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347642.7Link to Ensembl Protein Viewer:ENSP00000324956.3Re-query CCDS DB by Nucleotide ID:ENST00000347642Re-query CCDS DB by Protein ID:ENSP00000324956
Original member Current member EBI ENST00000356143.5 ENSP00000348462.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356143.5Link to Ensembl Protein Viewer:ENSP00000348462.1Re-query CCDS DB by Nucleotide ID:ENST00000356143Re-query CCDS DB by Protein ID:ENSP00000348462
Original member Current member EBI ENST00000394519.5 ENSP00000378027.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394519.5Link to Ensembl Protein Viewer:ENSP00000378027.1Re-query CCDS DB by Nucleotide ID:ENST00000394519Re-query CCDS DB by Protein ID:ENSP00000378027
Original member Current member EBI ENST00000394520.7 ENSP00000378028.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394520.7Link to Ensembl Protein Viewer:ENSP00000378028.2Re-query CCDS DB by Nucleotide ID:ENST00000394520Re-query CCDS DB by Protein ID:ENSP00000378028
Original member Current member NCBI NM_001201365.2 NP_001188294.1 Accepted alive Link to Nucleotide Sequence:NM_001201365.2Link to Protein Sequence:NP_001188294.1Re-query CCDS DB by Nucleotide ID:NM_001201365Re-query CCDS DB by Protein ID:NP_001188294Link to BLAST:NP_001188294.1
Original member Current member NCBI NM_004290.5 NP_004281.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004290.5Link to Protein Sequence:NP_004281.1Re-query CCDS DB by Nucleotide ID:NM_004290Re-query CCDS DB by Protein ID:NP_004281Link to BLAST:NP_004281.1
Original member Current member NCBI NM_183399.3 NP_899646.1 Accepted alive Link to Nucleotide Sequence:NM_183399.3Link to Protein Sequence:NP_899646.1Re-query CCDS DB by Nucleotide ID:NM_183399Re-query CCDS DB by Protein ID:NP_899646Link to BLAST:NP_899646.1
Original member Current member NCBI NM_183400.3 NP_899647.1 Accepted alive Link to Nucleotide Sequence:NM_183400.3Link to Protein Sequence:NP_899647.1Re-query CCDS DB by Nucleotide ID:NM_183400Re-query CCDS DB by Protein ID:NP_899647Link to BLAST:NP_899647.1
Original member Current member NCBI NM_183401.3 NP_899648.1 Accepted alive Link to Nucleotide Sequence:NM_183401.3Link to Protein Sequence:NP_899648.1Re-query CCDS DB by Nucleotide ID:NM_183401Re-query CCDS DB by Protein ID:NP_899648Link to BLAST:NP_899648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188294.1 474 Q9UBS8-1 474 100% 0 0
NP_004281.1 474 Q9UBS8-1 474 100% 0 0
NP_899646.1 474 Q9UBS8-1 474 100% 0 0
NP_899647.1 474 Q9UBS8-1 474 100% 0 0
NP_899648.1 474 Q9UBS8-1 474 100% 0 0

Chromosomal Locations for CCDS 4270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141973589 141973742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141974804 141974955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141978303 141978830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141980123 141980351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141983380 141983552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141984803 141984933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141987733 141987790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGTCGTCAGAAGATCGAGAAGCTCAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGATGGAGATG
AATTTAGAAAAGCAGAGTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGCCACAGAATTTCAA
GATATTTGTGAGCGGCAATTCAAATGAGTGTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTG
CCTCCACTTGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCTTCCCCACCTTCATTCACACTTA
GTGGCAAATGGCTGTCACCAACTCAGCTATCTGCTCTATGCAAGCACTTAGACAACCTATGGGAAGAACA
CCGTGGCAGCGTGGTCCTGTTTGCCTGGATGCAATTTCTTAAGGAAGAGACCCTAGCATACTTGAATATT
GTCTCTCCTTTTGAGCTCAAGATTGGTTCTCAGAAAAAAGTGCAGAGAAGGACAGCTCAAGCTTCTCCCA
ACACAGAGCTAGATTTTGGAGGAGCTGCTGGATCTGATGTAGACCAAGAGGAAATTGTGGATGAGAGAGC
AGTGCAGGATGTGGAATCACTGTCAAATCTGATCCAGGAAATCTTGGACTTTGATCAAGCTCAGCAGATA
AAATGCTTTAATAGTAAATTGTTCCTGTGCAGTATCTGTTTCTGTGAGAAGCTGGGTAGTGAATGCATGT
ACTTCTTGGAGTGCAGGCATGTGTACTGCAAAGCCTGTCTGAAGGACTACTTTGAAATCCAGATCAGAGA
TGGCCAGGTTCAATGCCTCAACTGCCCAGAACCAAAGTGCCCTTCGGTGGCCACTCCTGGTCAGGTCAAA
GAGTTAGTGGAAGCAGAGTTATTTGCCCGTTATGACCGCCTTCTCCTCCAGTCCTCCTTGGACCTGATGG
CAGATGTGGTGTACTGCCCCCGGCCGTGCTGCCAGCTGCCTGTGATGCAGGAACCTGGCTGCACCATGGG
TATCTGCTCCAGCTGCAATTTTGCCTTCTGTACTTTGTGCAGGTTGACCTACCATGGGGTCTCCCCATGT
AAGGTGACTGCAGAGAAATTAATGGACTTACGAAATGAATACCTGCAAGCGGATGAGGCTAATAAAAGAC
TTTTGGATCAAAGGTATGGTAAGAGAGTGATTCAGAAGGCACTGGAAGAGATGGAAAGTAAGGAGTGGCT
AGAGAAGAACTCAAAGAGCTGCCCATGTTGTGGAACTCCCATAGAGAAATTAGACGGATGTAACAAGATG
ACATGTACTGGCTGTATGCAATATTTCTGTTGGATTTGCATGGGTTCTCTCTCTAGAGCAAACCCTTACA
AACATTTCAATGACCCTGGTTCACCATGTTTTAACCGGCTGTTTTATGCTGTGGATGTTGACGACGATAT
TTGGGAAGATGAGGTAGAAGACTAG

Translation (474 aa):
MSSEDREAQEDELLALASIYDGDEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNECLQNSGFEYTICFL
PPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGSVVLFAWMQFLKEETLAYLNI
VSPFELKIGSQKKVQRRTAQASPNTELDFGGAAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQI
KCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVK
ELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLTYHGVSPC
KVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKM
TCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYAVDVDDDIWEDEVED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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