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Report for CCDS42866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42866.1 Public Homo sapiens 20 NECAB3 24 110 108 CCDS HistoryNCBI Gene:63941Re-query CCDS DB by CCDS ID:42866.1Re-query CCDS DB by GeneID:63941See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246190.11 ENSP00000246190.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246190.11Link to Ensembl Protein Viewer:ENSP00000246190.6Re-query CCDS DB by Nucleotide ID:ENST00000246190Re-query CCDS DB by Protein ID:ENSP00000246190
Original member Current member NCBI NM_031232.4 NP_112509.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031232.4Link to Protein Sequence:NP_112509.3Re-query CCDS DB by Nucleotide ID:NM_031232Re-query CCDS DB by Protein ID:NP_112509Link to BLAST:NP_112509.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112509.3 396 Q96P71-1 396 100% 0 0

Chromosomal Locations for CCDS 42866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33657829 33657857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33657942 33658033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33658477 33658554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33658722 33658834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33659497 33659732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33659885 33660003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33660259 33660395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33669375 33669472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33669687 33669712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33670684 33670792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33672398 33672422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33674224 33674352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCGTGCGCGGGGCTGCTCACCGTGTGCCTGCTCCGGCCGCCCGCGCCCCAGCCCCAGCCCCAGACCC
CGCGGCACCCCCAGCTCGCGCCCGACCCGGGGCCCGCCGGACACACGCTCTTCCAGGACGTTTTCCGCAG
AGCAGACAAGAATGATGATGGGAAGCTCTCATTTGAGGAATTCCAGAATTACTTTGCCGATGGGGTTCTC
AGCCTGGGGGAGCTGCAGGAACTGTTCAGCGGCATTGATGGGCATCTCACCGACAATTTAGAAACAGAAA
AACTGTGTGACTACTTCTCAGAGCACCTGGGTGTCTACCGGCCGGTGCTGGCTGCATTGGAATCGCTGAA
CCGTGCAGTGCTCGCTGCCATGGATGCCACCAAGCTGGAGTACGAGAGGGCCTCCAAAGTGGACCAGTTT
GTGACGCGCTTCCTGCTGCGGGAGACGGTGAGCCAGCTGCAAGCCCTTCAGAGCTCGCTGGAGGGGGCGT
CAGATACCCTGGAGGCCCAGGCCCATGGCTGGCGGTCAGATGCAGAGAGCGTGGAGGCGCAGAGCAGGCT
CTGCGGCAGCCGGCGGGCAGGACGCCGAGCCCTGAGGAGTGTCAGCCGGTCATCCACCTGGTCCCCCGGC
TCTTCTGACACAGGGCGCAGCTCAGAGGCCGAGATGCAGTGGCGGCTCCAGGTGAACCGCCTCCAGGAGC
TCATCGACCAGCTCGAGTGCAAGGTGAGGGCCGTGGGGCCAGGGCCCCACAAGGGAGGACCCTCCTGGTA
TCCACCAGAGCCAGGCCCATGCTGGAGGCCCGGCCCACACTCTGTGCCCTCACAGGCCCCCCGGCTGGAA
CCCCTGCGTGAAGAGGACCTGGCCAAGGGGCCTGACTTGCACATCCTCATGGCCCAGAGGCAGGTCCAGG
TGGCAGAGGAAGGCCTGCAGGACTTCCACCGAGCCCTGCGCTGCTATGTGGACTTCACAGGGGCCCAGAG
CCATTGTCTGCATGTGTCCGCCCAGAAGATGCTGGACGGTGCCTCCTTCACCCTGTATGAGTTCTGGCAG
GATGAGGCCTCCTGGAGAAGGCACCAGCAGTCGCCTGGCAGCAAGGCCTTCCAGCGCATCCTCATCGACC
ACCTGCGGGCCCCGGACACCCTCACCACTGTGTTCTTCCCAGCCTCCTGGTGGATAATGAATAACAACTG
A

Translation (396 aa):
MACAGLLTVCLLRPPAPQPQPQTPRHPQLAPDPGPAGHTLFQDVFRRADKNDDGKLSFEEFQNYFADGVL
SLGELQELFSGIDGHLTDNLETEKLCDYFSEHLGVYRPVLAALESLNRAVLAAMDATKLEYERASKVDQF
VTRFLLRETVSQLQALQSSLEGASDTLEAQAHGWRSDAESVEAQSRLCGSRRAGRRALRSVSRSSTWSPG
SSDTGRSSEAEMQWRLQVNRLQELIDQLECKVRAVGPGPHKGGPSWYPPEPGPCWRPGPHSVPSQAPRLE
PLREEDLAKGPDLHILMAQRQVQVAEEGLQDFHRALRCYVDFTGAQSHCLHVSAQKMLDGASFTLYEFWQ
DEASWRRHQQSPGSKAFQRILIDHLRAPDTLTTVFFPASWWIMNNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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