NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42957.1 Public Homo sapiens 21 KRTAP10-4 24 110 108 CCDS HistoryNCBI Gene:386672Re-query CCDS DB by CCDS ID:42957.1Re-query CCDS DB by GeneID:386672See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42957.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400374.4 ENSP00000383225.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400374.4Link to Ensembl Protein Viewer:ENSP00000383225.3Re-query CCDS DB by Nucleotide ID:ENST00000400374Re-query CCDS DB by Protein ID:ENSP00000383225
Original member Current member NCBI NM_198687.2 NP_941960.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198687.2Link to Protein Sequence:NP_941960.2Re-query CCDS DB by Nucleotide ID:NM_198687Re-query CCDS DB by Protein ID:NP_941960Link to BLAST:NP_941960.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941960.2 401 P60372 401 100% 0 0

Chromosomal Locations for CCDS 42957.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44573759 44574964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGTCCGTCTGCTCCAGCGACCTGAGCTACAGCAGCCGCGTCTGCCTTCCTGGTTCCTGTGACTCTTGCT
CCGACTCCTGGCAGGTGGACGACTGCCCAGAGAGCTGCTGCGAGCCCCCCTGCTGCGCCCCCAGCTGCTG
CGCCCCGGCCCCCTGCCTGAGCCTGGTCTGCACCCCAGTGAGCCGTGTGTCCAGCCCCTGCTGCCCAGTG
ACCTGTGAGCCCAGCCCCTGCCAATCAGGCTGCACCAGCTCCTGCACGCCCTCGTGCTGCCAGCAGTCTA
GCTGCCAGCTGGCTTGCTGTGCCTCCTCCCCCTGCCAGCAGGCCTGCTGCGTGCCCGTCTGCTGCAAGAC
TGTCTGCTGCAAGCCTGTGTGCTGTGTGCCCGTCTGCTGTGGGGATTCTTCATGCTGCCAGCAGTCTAGC
TGCCAGTCAGCTTGCTGCACCTCCTCCCCCTGCCAGCAGGCCTGCTGTGTGCCCATCTGCTGCAAGCCTG
TCTGCTCTGGGATTTCCTCTTCGTGCTGCCAGCAGTCTAGCTGTGTGAGCTGTGTGTCCAGCCCCTGCTG
CCAGGCGGTCTGTGAGCCCAGCCCCTGCCAATCAGGCTGCATCAGCTCCTGCACGCCCTCGTGCTGCCAG
CAGTCTAGCTGCCAGCCGGCTTGCTGCACCTCCTCCTCCTGCCAGCAGGCCTGCTGCGTGCCCGTCTGCT
GCAAGACTGTCTGCTGCAAGCCTGTGTGCTCTGAGGATTCCTCTTCATGCTGCCAGCAGTCTAGCTGCCA
GCCGGCTTGCTGCACCTCCTCTCCCTGCCAGCAGGCTTGCTGTGTGCCTGTCTGCTGCAAGCCTGTGTGC
TGCAAGCCTGTCTGCTCTGTGCCCATCTGCTCTGGGGCTTCCTCTCTGTGCTGCCAGCAGTCTAGCTGCC
AGCCAGCTTGCTGCACCTCCTCCCAAAGCCAGCAGGGCTGCTGCGTGCCCGTCTGCTGCAAGCCTGTGAG
CTGTGTGCCTGTTTGCTCTGGGGCTTCCTCTTCATGCTGCCAGCAATCTAGCTGCCAGCCAGCTTGCTGC
ACCACCTCCTGCTGCAGACCCTCCTCCTCCGTGTCCCTCCTCTGCCGCCCCGTGTGCAGGCCCGCCTGCT
GCGTGCCCGTCCCTTCCTGCTGTGCTCCCACCTCCTCCTGCCAACCCAGCTGCTGCCGCCCAGCCTCCTG
CGTGTCCCTCCTCTGA

Translation (401 aa):
MSVCSSDLSYSSRVCLPGSCDSCSDSWQVDDCPESCCEPPCCAPSCCAPAPCLSLVCTPVSRVSSPCCPV
TCEPSPCQSGCTSSCTPSCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVPVCCGDSSCCQQSS
CQSACCTSSPCQQACCVPICCKPVCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQ
QSSCQPACCTSSSCQQACCVPVCCKTVCCKPVCSEDSSSCCQQSSCQPACCTSSPCQQACCVPVCCKPVC
CKPVCSVPICSGASSLCCQQSSCQPACCTSSQSQQGCCVPVCCKPVSCVPVCSGASSSCCQQSSCQPACC
TTSCCRPSSSVSLLCRPVCRPACCVPVPSCCAPTSSCQPSCCRPASCVSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH