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Report for CCDS43034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43034.1 Public Homo sapiens 22 SELENOO 24 110 108 CCDS HistoryNCBI Gene:83642Re-query CCDS DB by CCDS ID:43034.1Re-query CCDS DB by GeneID:83642See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 43034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380903.7 ENSP00000370288.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380903.7Link to Ensembl Protein Viewer:ENSP00000370288.2Re-query CCDS DB by Nucleotide ID:ENST00000380903Re-query CCDS DB by Protein ID:ENSP00000370288
Original member Current member NCBI NM_031454.2 NP_113642.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031454.2Link to Protein Sequence:NP_113642.1Re-query CCDS DB by Nucleotide ID:NM_031454Re-query CCDS DB by Protein ID:NP_113642Link to BLAST:NP_113642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113642.1 669 Q9BVL4 669 100% 0 0

Chromosomal Locations for CCDS 43034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50201037 50201590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50206317 50206520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50208536 50208716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50210181 50210311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50210631 50210911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50215717 50215867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50216691 50216876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50216972 50217128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50217205 50217369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 667

Nucleotide Sequence (2010 nt):
ATGGCCGTATACAGGGCAGCGCTCGGGGCTTCGCTCGCGGCTGCCCGACTCTTGCCCCTCGGTCGCTGTT
CC
CCGTCGCCGGCGCCCCGCTCTACGTTGTCGGGCGCCGCCATGGAGCCCGCGCCTCGCTGGCTGGCGGG
G
CTGCGCTTCGACAACCGCGCCCTGCGCGCCCTGCCCGTGGAGGCGCCGCCGCCCGGTCCCGAGGGCGCC
CCG
TCCGCGCCGCGGCCCGTGCCCGGGGCCTGCTTCACCCGCGTGCAGCCCACCCCGCTGCGGCAGCCGC
GC
CTCGTGGCGCTGTCAGAGCCCGCGCTGGCGTTGCTGGGCCTGGGCGCGCCGCCCGCGCGCGAGGCCGA
G
GCCGAGGCCGCGCTGTTCTTCAGCGGCAACGCGCTCCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTAC
TGC
GGCCACCAATTCGGCCAGTTCGCCGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTGT
GC
ACGGCGACCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGGCCCACGCCCTTCTCCAGACAGGC
C
GACGGTCGCAAGGTCCTACGGTCAAGCATCCGGGAGTTTCTATGCAGCGAAGCCATGTTCCACCTGGGA
GTC
CCCACCACACGGGCCGGCGCCTGCGTCACGTCCGAGTCCACGGTGGTGCGCGACGTGTTCTATGATG
GT
AATCCCAAATATGAACAATGCACGGTTGTGTTGCGTGTAGCTTCCACTTTCATAAGGTTTGGATCCTT
T
GAGATTTTTAAGTCTGCAGATGAGCACACAGGGCGTGCAGGCCCCAGCGTGGGGAGGAACGACATTCGA
GTG
CAGCTGCTCGACTATGTCATCAGCTCCTTTTACCCCGAGATCCAGGCTGCTCATGCCAGCGACAGCG
TG
CAGAGAAATGCTGCCTTCTTCCGGGAGGTGACGCGGCGCACGGCGCGGATGGTGGCCGAGTGGCAGTG
T
GTGGGCTTCTGCCACGGCGTGCTCAACACCGACAACATGAGCATCCTGGGGCTCACCATCGACTACGGG
CCC
TTTGGCTTCCTGGACAGGTACGACCCCGACCACGTGTGCAATGCCTCCGACAACACCGGCCGCTACG
CG
TACAGCAAGCAGCCCGAGGTGTGCAGGTGGAACCTGCGGAAGCTGGCCGAGGCCCTGCAGCCGGAACT
G
CCCCTGGAGCTGGGGGAGGCCATCCTGGCCGAGGAGTTTGACGCCGAGTTCCAAAGGCACTACCTGCAG
AAG
ATGCGCAGGAAGCTGGGCCTCGTGCAGGTGGAGCTGGAGGAAGACGGGGCGCTGGTGTCCAAGCTCC
TG
GAGACCATGCATCTGACCGGTGCCGACTTCACAAACACCTTCTACTTGCTGAGCTCCTTCCCAGTGGA
G
CTAGAGTCGCCAGGCCTGGCGGAATTCCTGGCCAGGCTGATGGAGCAGTGTGCCTCCCTGGAGGAGCTG
AGG
CTGGCCTTCCGGCCCCAGATGGATCCCCGGCAGCTATCCATGATGCTGATGCTGGCGCAGTCAAACC
CG
CAGCTGTTCGCGCTTATGGGCACCCGGGCAGGCATCGCCAGGGAGCTGGAGCGTGTGGAGCAGCAGTC
T
CGGCTGGAGCAGCTGAGTGCGGCAGAGCTGCAGAGCAGGAACCAGGGCCACTGGGCTGACTGGCTACAG
GCG
TACAGAGCCCGGCTGGACAAGGACCTGGAAGGCGCTGGGGACGCTGCCGCCTGGCAGGCTGAGCACG
TG
CGCGTGATGCACGCCAACAACCCGAAGTACGTGCTGAGGAACTACATCGCGCAGAATGCCATCGAGGC
T
GCCGAGCGCGGGGACTTCTCAGAGGTGCGGCGGGTGCTGAAACTACTGGAGACCCCTTACCACTGCGAG
GCG
GGGGCCGCCACAGACGCCGAGGCCACGGAAGCCGACGGGGCGGACGGCAGGCAGCGCTCCTACAGCA
GT
AAGCCCCCGCTCTGGGCAGCAGAACTGTGCGTGACATGATCTTCGTAA


Translation (669 aa):
MAVYRAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRALPVEAPPPGPEGA
P
SAPRPVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAAHCY
C
GHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS
RQADGRKVLRSSIREFLCSEAMFHLG
V
PTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI
RFGSFEIFKSADEHTGRAGPSVGRNDIR
V
QLLDYVISSFYPEIQAAHASDSVQRNAAFFRE
VTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYG
P
FGFLD
RYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQ
K
MRRKLGLVQVELEEDGALVSKLLETMHLT
GADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEEL
R
LAFRPQMDP
RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQ
A
Y
RARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKLLETPYHCE
A
GAATDAEATEADGADGRQRSYSSKPPLWAAELCVTUSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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