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Report for CCDS43187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43187.1 Public Homo sapiens 3 ATP13A3 24 110 108 CCDS HistoryNCBI Gene:79572Re-query CCDS DB by CCDS ID:43187.1Re-query CCDS DB by GeneID:79572See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439040.6 ENSP00000416508.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439040.6Link to Ensembl Protein Viewer:ENSP00000416508.1Re-query CCDS DB by Nucleotide ID:ENST00000439040Re-query CCDS DB by Protein ID:ENSP00000416508
Original member Current member EBI ENST00000645538.1 ENSP00000494471.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645538.1Link to Ensembl Protein Viewer:ENSP00000494471.1Re-query CCDS DB by Nucleotide ID:ENST00000645538Re-query CCDS DB by Protein ID:ENSP00000494471
Original member Current member NCBI NM_024524.4 NP_078800.3 Accepted alive Link to Nucleotide Sequence:NM_024524.4Link to Protein Sequence:NP_078800.3Re-query CCDS DB by Nucleotide ID:NM_024524Re-query CCDS DB by Protein ID:NP_078800Link to BLAST:NP_078800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078800.3 1226 Q9H7F0-1 1226 100% 0 0

Chromosomal Locations for CCDS 43187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 194405919 194406116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194413759 194413839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194419879 194419967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194425342 194425529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194427075 194427252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194428845 194428917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194429678 194429774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194430072 194430181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194430273 194430315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194430943 194431022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194431104 194431226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194431717 194431892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194433772 194433896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194437095 194437215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194437311 194437464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194437556 194437573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194438856 194438972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194441311 194441461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194444725 194444786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194446927 194447115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194447852 194448009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194448457 194448636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194450145 194450276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194453706 194453778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194454258 194454392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194455893 194455962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194457094 194457174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194459471 194459541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194459789 194459971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194460658 194460831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194462140 194462190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3681 nt):
ATGGACAGGGAAGAAAGGAAGACCATCAATCAGGGTCAAGAAGATGAAATGGAGATTTATGGTTACAATT
TGAGTCGCTGGAAGCTTGCCATAGTTTCTTTAGGAGTGATTTGCTCTGGTGGGTTTCTCCTCCTCCTCCT
CTATTGGATGCCTGAGTGGCGGGTGAAAGCGACCTGTGTCAGAGCTGCAATTAAAGACTGTGAAGTAGTG
CTGCTGAGGACTACTGATGAATTCAAAATGTGGTTTTGTGCAAAAATTCGCGTTCTTTCTTTGGAAACTT
ACCCAGTTTCAAGTCCAAAATCTATGTCTAATAAGCTTTCAAATGGCCATGCAGTTTGTTTAATTGAGAA
TCCCACTGAAGAAAATAGGCACAGGATCAGTAAATATTCACAGACTGAATCACAACAGATTCGTTATTTC
ACCCACCATAGTGTAAAATATTTCTGGAATGATACCATTCACAATTTTGATTTCTTAAAGGGACTGGATG
AAGGTGTTTCTTGTACGTCAATTTATGAAAAGCATAGTGCAGGACTGACAAAGGGGATGCATGCCTACAG
AAAACTGCTTTATGGAGTAAATGAAATTGCTGTAAAAGTGCCTTCTGTTTTTAAGCTTCTAATTAAAGAG
GTTCTCAACCCATTTTACATTTTCCAGCTGTTCAGTGTTATACTGTGGAGCACTGATGAATACTATTACT
ATGCTCTAGCTATTGTGGTTATGTCCATAGTATCAATCGTAAGCTCACTATATTCCATTAGAAAGCAATA
TGTTATGTTGCATGACATGGTGGCAACTCATAGTACCGTAAGAGTTTCAGTTTGTAGAGTAAATGAAGAA
ATAGAAGAAATCTTTTCTACCGACCTTGTGCCAGGAGATGTCATGGTCATTCCATTAAATGGGACAATAA
TGCCTTGTGATGCTGTGCTTATTAATGGTACCTGCATTGTAAACGAAAGCATGTTAACAGGAGAAAGTGT
TCCAGTGACAAAGACTAATTTGCCAAATCCTTCAGTGGATGTGAAAGGAATAGGAGATGAATTATATAAT
CCAGAAACACATAAACGACATACTTTGTTTTGTGGGACAACTGTTATTCAGACTCGTTTCTACACTGGAG
AACTCGTCAAAGCCATAGTTGTTAGAACAGGATTTAGTACTTCCAAAGGACAGCTTGTTCGTTCCATATT
GTATCCCAAACCAACTGATTTTAAACTCTACAGAGATGCCTACTTGTTTCTACTATGTCTTGTGGCAGTT
GCTGGCATTGGGTTTATCTACACTATTATTAATAGCATTTTAAATGAGGTACAAGTTGGGGTCATAATTA
TCGAGTCTCTTGATATTATCACAATTACTGTGCCCCCTGCACTTCCTGCTGCAATGACTGCTGGTATTGT
GTATGCTCAGAGAAGACTGAAAAAAATCGGTATTTTCTGTATCAGTCCTCAAAGAATAAATATTTGTGGA
CAGCTCAATCTTGTTTGCTTTGACAAGACTGGAACTCTAACTGAAGATGGTTTAGATCTTTGGGGGATTC
AACGAGTGGAAAATGCACGATTTCTTTCACCAGAAGAAAATGTGTGCAATGAGATGTTGGTAAAATCCCA
GTTTGTTGCTTGTATGGCTACTTGTCATTCACTTACAAAAATTGAAGGAGTGCTCTCTGGTGATCCACTT
GATCTGAAAATGTTTGAGGCTATTGGATGGATTCTGGAAGAAGCAACTGAAGAAGAAACAGCACTTCATA
ATCGAATTATGCCCACAGTGGTTCGTCCTCCCAAACAACTGCTTCCTGAATCTACCCCTGCAGGAAACCA
AGAAATGGAGCTGTTTGAACTTCCAGCTACTTATGAGATAGGAATTGTTCGCCAGTTCCCATTTTCTTCT
GCTTTGCAACGTATGAGTGTGGTTGCCAGGGTGCTGGGGGATAGGAAAATGGACGCCTACATGAAAGGAG
CGCCCGAGGCCATTGCCGGTCTCTGTAAACCTGAAACAGTTCCTGTCGATTTTCAAAACGTTTTGGAAGA
CTTCACTAAACAGGGCTTCCGTGTGATTGCTCTTGCACACAGAAAATTGGAGTCAAAACTGACATGGCAT
AAAGTACAGAATATTAGCAGAGATGCAATTGAGAACAACATGGATTTTATGGGATTAATTATAATGCAGA
ACAAATTAAAGCAAGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGCACCGTCATGGT
CACAGGTGACAGTATGTTGACTGCTGTCTCTGTGGCCAGAGATTGTGGAATGATTCTACCTCAGGATAAA
GTGATTATTGCTGAAGCATTACCTCCAAAGGATGGGAAAGTTGCCAAAATAAATTGGCATTATGCAGACT
CCCTCACGCAGTGCAGTCATCCATCAGCAATTGACCCAGAGGCTATTCCGGTTAAATTGGTCCATGATAG
CTTAGAGGATCTTCAAATGACTCGTTATCATTTTGCAATGAATGGAAAATCATTCTCAGTGATACTGGAG
CATTTTCAAGACCTTGTTCCTAAGTTGATGTTGCATGGCACCGTGTTTGCCCGTATGGCACCTGATCAGA
AGACACAGTTGATAGAAGCATTGCAAAATGTTGATTATTTTGTTGGGATGTGTGGTGATGGCGCAAATGA
TTGTGGTGCTTTGAAGAGGGCACACGGAGGCATTTCCTTATCGGAGCTCGAAGCTTCAGTGGCATCTCCC
TTTACCTCTAAGACTCCTAGTATTTCCTGTGTGCCAAACCTTATCAGGGAAGGCCGTGCTGCTTTAATAA
CTTCCTTCTGTGTGTTTAAATTCATGGCATTGTACAGCATTATCCAGTACTTCAGTGTTACTCTGCTGTA
TTCTATCTTAAGTAACCTAGGAGACTTCCAGTTTCTCTTCATTGATCTGGCAATCATTTTGGTAGTGGTA
TTTACAATGAGTTTAAATCCTGCCTGGAAAGAACTTGTGGCACAAAGACCACCTTCGGGTCTTATATCTG
GGGCCCTTCTCTTCTCCGTTTTGTCTCAGATTATCATCTGCATTGGATTTCAATCTTTGGGTTTTTTTTG
GGTCAAACAGCAACCTTGGTATGAAGTGTGGCATCCAAAATCAGATGCTTGTAATACAACAGGAAGCGGG
TTTTGGAATTCTTCACACGTAGACAATGAAACCGAACTTGATGAACATAATATACAAAATTATGAAAATA
CCACAGTGTTTTTTATTTCCAGTTTTCAGTACCTCATAGTGGCAATTGCCTTTTCAAAAGGAAAACCCTT
CAGGCAACCTTGCTACAAAAATTATTTTTTTGTTTTTTCTGTGATTTTTTTATATATTTTTATATTATTC
ATCATGTTGTATCCAGTTGCCTCTGTTGACCAGGTTCTTCAGATAGTGTGTGTACCATATCAGTGGCGTG
TAACTATGCTCATCATTGTTCTTGTCAATGCCTTTGTGTCTATCACAGTGGAGGAGTCAGTGGATCGGTG
GGGAAAATGCTGCTTACCCTGGGCCCTGGGCTGTAGAAAGAAGACACCAAAGGCAAAGTACATGTATCTG
GCGCAGGAGCTCTTGGTTGATCCAGAATGGCCACCAAAACCTCAGACAACCACAGAAGCTAAAGCTTTAG
TTAAGGAGAATGGATCATGTCAAATCATCACCATAACATAG

Translation (1226 aa):
MDREERKTINQGQEDEMEIYGYNLSRWKLAIVSLGVICSGGFLLLLLYWMPEWRVKATCVRAAIKDCEVV
LLRTTDEFKMWFCAKIRVLSLETYPVSSPKSMSNKLSNGHAVCLIENPTEENRHRISKYSQTESQQIRYF
THHSVKYFWNDTIHNFDFLKGLDEGVSCTSIYEKHSAGLTKGMHAYRKLLYGVNEIAVKVPSVFKLLIKE
VLNPFYIFQLFSVILWSTDEYYYYALAIVVMSIVSIVSSLYSIRKQYVMLHDMVATHSTVRVSVCRVNEE
IEEIFSTDLVPGDVMVIPLNGTIMPCDAVLINGTCIVNESMLTGESVPVTKTNLPNPSVDVKGIGDELYN
PETHKRHTLFCGTTVIQTRFYTGELVKAIVVRTGFSTSKGQLVRSILYPKPTDFKLYRDAYLFLLCLVAV
AGIGFIYTIINSILNEVQVGVIIIESLDIITITVPPALPAAMTAGIVYAQRRLKKIGIFCISPQRINICG
QLNLVCFDKTGTLTEDGLDLWGIQRVENARFLSPEENVCNEMLVKSQFVACMATCHSLTKIEGVLSGDPL
DLKMFEAIGWILEEATEEETALHNRIMPTVVRPPKQLLPESTPAGNQEMELFELPATYEIGIVRQFPFSS
ALQRMSVVARVLGDRKMDAYMKGAPEAIAGLCKPETVPVDFQNVLEDFTKQGFRVIALAHRKLESKLTWH
KVQNISRDAIENNMDFMGLIIMQNKLKQETPAVLEDLHKANIRTVMVTGDSMLTAVSVARDCGMILPQDK
VIIAEALPPKDGKVAKINWHYADSLTQCSHPSAIDPEAIPVKLVHDSLEDLQMTRYHFAMNGKSFSVILE
HFQDLVPKLMLHGTVFARMAPDQKTQLIEALQNVDYFVGMCGDGANDCGALKRAHGGISLSELEASVASP
FTSKTPSISCVPNLIREGRAALITSFCVFKFMALYSIIQYFSVTLLYSILSNLGDFQFLFIDLAIILVVV
FTMSLNPAWKELVAQRPPSGLISGALLFSVLSQIIICIGFQSLGFFWVKQQPWYEVWHPKSDACNTTGSG
FWNSSHVDNETELDEHNIQNYENTTVFFISSFQYLIVAIAFSKGKPFRQPCYKNYFFVFSVIFLYIFILF
IMLYPVASVDQVLQIVCVPYQWRVTMLIIVLVNAFVSITVEESVDRWGKCCLPWALGCRKKTPKAKYMYL
AQELLVDPEWPPKPQTTTEAKALVKENGSCQIITIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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