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Report for CCDS43502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43502.1 Public Homo sapiens 6 TPD52L1 24 110 108 CCDS HistoryNCBI Gene:7164Re-query CCDS DB by CCDS ID:43502.1Re-query CCDS DB by GeneID:7164See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532429.5 ENSP00000435447.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532429.5Link to Ensembl Protein Viewer:ENSP00000435447.1Re-query CCDS DB by Nucleotide ID:ENST00000532429Re-query CCDS DB by Protein ID:ENSP00000435447
Original member Current member NCBI NM_001003395.3 NP_001003395.1 Accepted alive Link to Nucleotide Sequence:NM_001003395.3Link to Protein Sequence:NP_001003395.1Re-query CCDS DB by Nucleotide ID:NM_001003395Re-query CCDS DB by Protein ID:NP_001003395Link to BLAST:NP_001003395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003395.1 175 Q16890-5 175 100% 0 0

Chromosomal Locations for CCDS 43502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125220146 125220193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125229118 125229266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125248282 125248383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125253717 125253755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125257098 125257158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125262834 125262962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTCTCTGAGGAGGAAAAGGAAGAGTTAAAAGCAGAGTTAGTTCAGCTAGAAGACGAAATTACAACAC
TACGACAAGTTTTGTCAGCGAAAGAAAGGCATCTAGTTGAGATAAAACAAAAACTCGGCATGAACCTGAT
GAATGAATTAAAACAGAACTTCAGCAAAAGCTGGCATGACATGCAGACTACCACTGCCTACAAGAAAACA
CATGAAACCCTGAGTCACGCAGGGCAAAAGGCAACTGCAGCTTTCAGCAACGTTGGAACGGCCATCAGCA
AGAAGTTCGGAGACATGAGTTACTCCATTCGCCATTCCATAAGTATGCCTGCTATGAGGAATTCTCCTAC
TTTCAAATCATTTGAGGAGAGGGTTGAGACAACTGTCACAAGCCTCAAGACGAAAGTAGGCGGTACGAAC
CCTAATGGAGGCAGTTTTGAGGAGGTCCTCAGCTCCACGGCCCATGCCAGTGCCCAGAGCTTGGCAGGAG
GCTCCCGGCGGACCAAGGAGGAGGAGCTGCAGTGCTAA

Translation (175 aa):
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKT
HETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTN
PNGGSFEEVLSSTAHASAQSLAGGSRRTKEEELQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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