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Report for CCDS43863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43863.1 Public Homo sapiens 9 SHOC1 24 110 108 CCDS HistoryNCBI Gene:158401Re-query CCDS DB by CCDS ID:43863.1Re-query CCDS DB by GeneID:158401See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43863.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394779.7 ENSP00000378259.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394779.7Link to Ensembl Protein Viewer:ENSP00000378259.3Re-query CCDS DB by Nucleotide ID:ENST00000394779Re-query CCDS DB by Protein ID:ENSP00000378259
Original member Current member NCBI NM_001080551.3 NP_001074020.3 Accepted alive Link to Nucleotide Sequence:NM_001080551.3Link to Protein Sequence:NP_001074020.3Re-query CCDS DB by Nucleotide ID:NM_001080551Re-query CCDS DB by Protein ID:NP_001074020Link to BLAST:NP_001074020.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074020.3 1405 Q5VXU9-3 1405 100% 0 0

Chromosomal Locations for CCDS 43863.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111686770 111686870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111691551 111692511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111693799 111693948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111694231 111694362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111699954 111700047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111702105 111702226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111703881 111703992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111705247 111705364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111706568 111706746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111707855 111707924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111713100 111713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111714445 111714623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111718184 111718288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111722409 111722585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111723792 111723911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111727633 111728049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111738280 111738522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111741476 111741570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111746234 111746342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111748092 111748199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111756325 111756478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758084 111758195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758695 111758848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111759156 111759288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4218 nt):
ATGTCAGAGACTCTGGGGGATGAATTGGAGATATTAAGAGGTAAAATGATGCAGAGAAGACCAAGGTCAG
CAGAAGTCAAATACTTCTATTTCTTTAAAATTTTGCTTAGGCTACGCCTGGCTATTTTGAAGTATTTATT
TATTGATGATAAAGGAATACTTTTTGTAAGTAGTAGAAAACACCTACCAACTTTGCCTACTCTCTTGAGT
AGACTAAAACTGTTTTTGGTAAAGGATCCTCTTTTAGATTTCAAAGGACAGATCTTCACAGAAGCTAATT
TTTCCAGGGAATGTTTCTCTCTTCAAGAAACTTTGGAAGCTTTTGTGAAAGAAGATTTTTGTATGGATAA
AGTGAACTTTTGTCAAGAGAAACTAGAAGATACAATATGTTTAAATGAGCCGTCAAGTTTTCTTATTGAG
TATGAATTCTTAATACCTCCAAGCCTCAAACCAGAAATTGATATTCCATCACTCTCAGAACTGAAGGAGT
TATTAAACCCAGTGCCAGAAATAATAAACTATGTAGATGAAAAGGAAAAGCTTTTTGAAAGAGATCTTAC
TAACAAGCATGGAATTGAGGATATCGGGGATATAAAATTCAGCTCCACAGAGATTTTGACCATTCAAAGC
CAGAGTGAACCAGAAGAGTGCAGTAAACCAGGAGAGTTAGAAATGCCACTAACTCCTCTATTCCTAACAT
GCCAACATTCTTCAGTGAATTCATTACGTACAGAACTTCAGACATTTCCATTATCTCCGGTTTGTAAAAT
TAATTTGCTTACTGCTGAAGAATCAGCTAATGAATACTACATGATGTGGCAATTAGAAAGATGTAGAAGC
CCTTTGAACCCATTTTTGCTTACAGTGCCAAGAATTCAAGAGCCCCACAGCCAATATTCAGTTACAGATT
TGAAAAAGATATTTTCTGTTAAAGAAGAAAGCCTTGTGATTAATCTGGAAAAGGCAGAGTGGTGGAAACA
AGCAGGACTAAATCTGAAAATGATGGAAACATTGGAACATCTGAATACATATTTATGTCATGATAATTTG
TCTTCTAATGACACTAAAATTGAGATATTTTTGCCTACGAAAGTGCTTCAATTAGAATCATGTCTAGAAC
ATAAAAGTCATTCTTCACCTATTGCACTTATTGATGAAAAATCTACAAATGCTCATTTATCACTTCCACA
AAAGAGTCCATCTCTGGCAAAAGAAGTACCAGATCTATGTTTTTCTGATGACTATTTCTCTGATAAAGGA
GCAGCAAAAGAAGAAAAACCAAAGAATGACCAAGAACCAGTAAACAGAATAATCCAAAAGAAAGAAAATA
ACGATCACTTTGAACTTGACTGCACAGGACCATCTATTAAATCACCTTCCTCTTCAATAATTAAAAAAGC
ATCTTTTGAACATGGCAAAAAACAAGAGAATGATTTGGACCTTTTGAGCGACTTTATTATGCTGCGAAAT
AAATATAAGACTTGCACCTCAAAGACTGAAGTCACAAACAGTGATGAAAAACATGATAAAGAAGCATGTT
CTTTGACACTTCAAGAAGAAAGTCCTATTGTTCATATTAATAAAACCCTGGAGGAAATAAATCAGGAAAG
GGGAACAGATAGTGTCATTGAAATTCAAGCGTCAGATAGCCAGTGCCAAGCATTTTGCCTCCTCGAAGCA
GCAGCTTCTCCTATCTTAAAAAACCTTGTATCCTTGTGTACCCTCCCTACTGCTAATTGGAAATTTGCCA
CTGTTATTTTTGACCAAACAAGGTTTCTCTTAAAGGAACAAGAAAAAGTAGTAAGTGATGCTGTTCGCCA
AGGTACAATTGATGAAAGAGAAATGACTTTCAAGCATGCCGCTCTCTTACATCTTCTGGTAACAATTAGA
GATGTCCTTTTAACATGCAGCTTGGACACAGCATTGGGATATTTGTCGAAGGCAAAAGATATCTACAACA
GCATTTTAGGCCCCTATTTGGGTGACATTTGGAGACAGCTGGAGATTGTACAGTTTATTAGGGGGAAAAA
GCCTGAAACCAACTACAAGATACAAGAATTGCAATGTCAGATACTAAGTTGGATGCAAAGTCAACAGCAA
ATTAAGGTACTGATTATAATAAGAATGGACTCAGACGGTGAAAAACATTTTCTCATTAAAATTCTTAACA
AAATAGAAGGTTTAACACTGACTGTCCTTCATTCAAATGAAAGAAAAGATTTTCTGGAATCTGAAGGTGT
TTTAAGGGGTACAAGTTCCTGTGTAGTTGTACATAATCAATATATTGGAGCAGATTTCCCCTGGAGTAAT
TTCTCATTTGTGGTGGAATACAATTATGTGGAAGACTCTTGTTGGACTAAACACTGCAAAGAGTTGAATA
TTCCTTACATGGCCTTTAAAGTGATTCTTCCAGACACAGTTTTAGAAAGAAGCACCTTGCTGGATAGATT
TGGAGGTTTTCTTTTGGAAATTCAGATTCCATATGTGTTTTTTGCATCTGAAGGACTTCTTAATACTCCA
GACATACTTCAGCTGCTAGAATCCAACTATAACATCTCACTAGTAGAGAGAGGCTGCAGTGAGTCATTGA
AACTCTTTGGAAGTTCAGAGTGTTATGTAGTGGTGACAATTGATGAACACACTGCCATAATTTTGCAGGA
TCTAGAAGAATTGAATTATGAGAAGGCATCAGACAATATCATTATGAGGCTGATGGCATTATCATTACAG
TACAGATATTGTTGGATAATTTTATATACCAAAGAAACATTAAATTCAGAGTATCTGCTTACAGAAAAGA
CACTTCATCACCTAGCACTGATTTATGCAGCTTTGGTTTCATTTGGGCTAAACTCTGAAGAACTGGATGT
AAAGCTTATAATTGCCCCAGGAGTAGAAGCAACTGCCTTGATAATTCGACAAATTGCTGACCACAGTTTA
ATGACCTCAAAGAGAGATCCTCATGAATGGTTGGATAAATCCTGGCTTAAAGTTTCACCATCTGAGGAAG
AAATGTACTTACTTGATTTTCCATGTATTAACCCATTGGTGGCTCAGCTCATGCTAAATAAAGGACCTTC
ACTGCATTGGATATTATTAGCAACTCTGTGTCAACTTCAGGAACTCCTACCTGAAGTCCCAGAAAAAGTG
TTAAAGCATTTTTGTAGCATCACTTCCCTATTCAAGATTGGTTCTTCTTCCATAACAAAATCACCGCAAA
TTTCGTCACCTCAGGAAAATAGGAATCAGATTAGTACCTTGTCTTCTCAAAGTTCAGCTTCTGATTTAGA
CTCTGTCATTCAAGAACATAATGAATATTATCAGTATTTAGGATTAGGAGAGACAGTGCAGGAAGACAAA
ACCACCATTTTGAATGACAACTCTTCCATTATGGAACTAAAAGAAATCTCAAGTTTTTTACCACCTGTGA
CTTCATACAATCAGACCAGCTACTGGAAAGACTCCAGCTGTAAATCTAATATAGGGCAGAATACTCCTTT
TCTAATTAATATAGAATCAAGGAGACCGGCTTATAACTCCTTTCTAAACCACAGTGATTCAGAGTCAGAT
GTCTTTTCTTTGGGTCTAACACAAATGAACTGTGAAACTATAAAATCACCAACTGACACTCAGAAGAGAG
TGTCAGTTGTCCCCCGTTTTATAAATTCTCAGAAAAGGAGAACACATGAAGCAAAAGGTTTCATAAATAA
AGATGTATCGGACCCTATCTTTTCACTAGAGGGCACTCAATCTCCTCTTCATTGGAACTTTAAGAAAAAT
ATATGGGAACAAGAGAATCACCCGTTCAACTTACAATATGGTGCACAGCAGACTGCATGTAACAAATTGT
ACTCTCAGAAAGGTAATTTATTCACTGATCAGCAAAAATGTCTATCAGATGAGTCTGAAGGCCTCACATG
TGAAAGTTCAAAAGATGAGACTTTCTGGAGAGAATTACCATCTGTCCCCAGTTTGGATTTATTTCGTGCT
TCTGATTCTAATGCAAATCAAAAAGAATTCAACAGCCTTTATTTCTACCAAAGAGCTGGAAAAAGTTTAG
GACAGAAAAGGCACCATGAATCTTCATTTAACTCAGGAGACAAGGAATCATTAACAGGTTTTATGTGCTC
ACAACTACCACAATTCAAAAAACGACGTCTAGCATATGAAAAAGTCCCTGGTAGAGTTGATGGGCAGACT
CGGCTGAGGTTTTTTTGA

Translation (1405 aa):
MSETLGDELEILRGKMMQRRPRSAEVKYFYFFKILLRLRLAILKYLFIDDKGILFVSSRKHLPTLPTLLS
RLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIE
YEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQS
QSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQTFPLSPVCKINLLTAEESANEYYMMWQLERCRS
PLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNL
SSNDTKIEIFLPTKVLQLESCLEHKSHSSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKG
AAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIKSPSSSIIKKASFEHGKKQENDLDLLSDFIMLRN
KYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHINKTLEEINQERGTDSVIEIQASDSQCQAFCLLEA
AASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVRQGTIDEREMTFKHAALLHLLVTIR
DVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQLEIVQFIRGKKPETNYKIQELQCQILSWMQSQQQ
IKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNERKDFLESEGVLRGTSSCVVVHNQYIGADFPWSN
FSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPDTVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTP
DILQLLESNYNISLVERGCSESLKLFGSSECYVVVTIDEHTAIILQDLEELNYEKASDNIIMRLMALSLQ
YRYCWIILYTKETLNSEYLLTEKTLHHLALIYAALVSFGLNSEELDVKLIIAPGVEATALIIRQIADHSL
MTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQLQELLPEVPEKV
LKHFCSITSLFKIGSSSITKSPQISSPQENRNQISTLSSQSSASDLDSVIQEHNEYYQYLGLGETVQEDK
TTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSCKSNIGQNTPFLINIESRRPAYNSFLNHSDSESD
VFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQKRRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKKN
IWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKCLSDESEGLTCESSKDETFWRELPSVPSLDLFRA
SDSNANQKEFNSLYFYQRAGKSLGQKRHHESSFNSGDKESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQT
RLRFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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