NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44111.1 Public Homo sapiens 1 MANEAL 24 110 108 CCDS HistoryNCBI Gene:149175Re-query CCDS DB by CCDS ID:44111.1Re-query CCDS DB by GeneID:149175See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397631.7 ENSP00000380755.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397631.7Link to Ensembl Protein Viewer:ENSP00000380755.3Re-query CCDS DB by Nucleotide ID:ENST00000397631Re-query CCDS DB by Protein ID:ENSP00000380755
Original member Current member NCBI NM_001031740.3 NP_001026910.1 Accepted alive Link to Nucleotide Sequence:NM_001031740.3Link to Protein Sequence:NP_001026910.1Re-query CCDS DB by Nucleotide ID:NM_001031740Re-query CCDS DB by Protein ID:NP_001026910Link to BLAST:NP_001026910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026910.1 250 Q5VSG8-3 250 100% 0 0

Chromosomal Locations for CCDS 44111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37794183 37794732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37795737 37795846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37796744 37796820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37799844 37799859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCCCGGCGGCGGCGCCGCGCCTGCATCGCTCTGTTCCTGGTGCTGCTCTTCGCCTTCGGCACCCTCA
TGGGTCTGCGCACGCTCAAGGCTCCGGACGGACTCCCGGCGCTGGGCCCGGGCCTGGAGCTGGCGCCCTT
TGAGCGACGCCCAGAGGGGGCCCCCGCGCCCGCTGCCAGGGCCCCGGCAGCCCCTGCCGCGCCGCCCCCG
CCGCCGCCGCCGCCCCGCACCGCGGACCCTGGCGGCTCCCCTGGGCCGGCACCCGCGGAGGCCGAGCCCG
CCCCCGTGCAGAGCCTGCGCGTCTACTCGGACCTGCACGCCTTCTACTACTCGTGGTACGGGAGCCCGCG
GCGCGAGGGCCACTACATTCACTGGGACCACGTCATGGTGCCGCACTGGGACCCCAAGATCTCGGCCAGC
TACCCCCGCGGCCGCCACAGCCCCCCAGACGACTTGGGCTCCAGCTTCTACCCGGAGCTGGGGCCCTACA
GCTCCCGGGACCCCGAAGTGCTGCGGGAGCATATGACCCAGCTCAAGGAAGCCGCCATCGGCGTCCTGGT
CCTGTCCTGGTACCCACCTGGCATGGCTGATGATAACGGGGAGCCCTCAGATGACCTGGTGCCCGCCATT
CTGGACACCGCCCATCAGTACAGCATCCAGGTGGCCTTCCACATCCAACCCTACAAGGGCCGGGATGACA
TCACTGTACATGACAACATCAAGTACATCATTGACACAACTGGAAAGCTGTGA

Translation (250 aa):
MARRRRRACIALFLVLLFAFGTLMGLRTLKAPDGLPALGPGLELAPFERRPEGAPAPAARAPAAPAAPPP
PPPPPRTADPGGSPGPAPAEAEPAPVQSLRVYSDLHAFYYSWYGSPRREGHYIHWDHVMVPHWDPKISAS
YPRGRHSPPDDLGSSFYPELGPYSSRDPEVLREHMTQLKEAAIGVLVLSWYPPGMADDNGEPSDDLVPAI
LDTAHQYSIQVAFHIQPYKGRDDITVHDNIKYIIDTTGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH