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Report for CCDS44277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44277.1 Public Homo sapiens 1 CENPL 24 110 108 CCDS HistoryNCBI Gene:91687Re-query CCDS DB by CCDS ID:44277.1Re-query CCDS DB by GeneID:91687See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356198.6 ENSP00000348527.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356198.6Link to Ensembl Protein Viewer:ENSP00000348527.2Re-query CCDS DB by Nucleotide ID:ENST00000356198Re-query CCDS DB by Protein ID:ENSP00000348527
Original member Current member NCBI NM_001127181.3 NP_001120653.1 Accepted alive Link to Nucleotide Sequence:NM_001127181.3Link to Protein Sequence:NP_001120653.1Re-query CCDS DB by Nucleotide ID:NM_001127181Re-query CCDS DB by Protein ID:NP_001120653Link to BLAST:NP_001120653.1
Original member Current member NCBI NM_001387284.1 NP_001374213.1 Accepted alive Link to Nucleotide Sequence:NM_001387284.1Link to Protein Sequence:NP_001374213.1Re-query CCDS DB by Nucleotide ID:NM_001387284Re-query CCDS DB by Protein ID:NP_001374213Link to BLAST:NP_001374213.1
Original member Current member NCBI NM_001387285.1 NP_001374214.1 Accepted alive Link to Nucleotide Sequence:NM_001387285.1Link to Protein Sequence:NP_001374214.1Re-query CCDS DB by Nucleotide ID:NM_001387285Re-query CCDS DB by Protein ID:NP_001374214Link to BLAST:NP_001374214.1
Original member Current member NCBI NM_001387286.1 NP_001374215.1 Accepted alive Link to Nucleotide Sequence:NM_001387286.1Link to Protein Sequence:NP_001374215.1Re-query CCDS DB by Nucleotide ID:NM_001387286Re-query CCDS DB by Protein ID:NP_001374215Link to BLAST:NP_001374215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120653.1 390 Q8N0S6-2 390 100% 0 0
NP_001374213.1 390 Q8N0S6-2 390 100% 0 0
NP_001374214.1 390 Q8N0S6-2 390 100% 0 0
NP_001374215.1 390 Q8N0S6-2 390 100% 0 0

Chromosomal Locations for CCDS 44277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173800448 173800519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173802963 173803505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173806439 173806576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173807267 173807518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173811132 173811299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGATTCTTACAGTGCACCAGAGTCAACTCCTAGTGCATCCTCAAGACCTGAAGATTACTTTATAGGTG
CCACTCCTCTGCAGAAACGATTAGAATCGGTCAGGAAGCAGAGTTCATTTATCCTGACTCCACCTCGAAG
GAAAATTCCCCAGTGTTCGCAGTTGCAGGAAGATGTTGACCCTCAAAAGGTTGCATTCCTTCTGCATAAA
CAGTGGACTTTATATAGTTTAACTCCCTTATATAAATTCTCCTATAGTAATCTCAAAGAGTATTCTAGAC
TTCTCAATGCTTTTATTGTTGCTGAAAAGCAAAAAGGACTTGCTGTGGAAGTGGGAGAAGACTTCAACAT
CAAAGTGATTTTTTCTACTCTCCTAGGAATGAAAGGAACACAAAGGGACCCGGAAGCATTTCTTGTCCAG
GGTCTCATTTTGTCACCCAGGCTGGAGTACAGTGGCACGATCTTGGTTGACTGCAACCTCTGTCTCCTGG
GCTCAAGTGATCCTTCCACCTTAGCCTTCCAAGTAGCTGGGACTGCAGGTGCATGCCACCACACTCGGAT
TGTGTCAAAATCTCAATTGCCATCTGAGAATAGAGAAGGTAAAGTGCTGTGGACTGGCTGGTTCTGCTGT
GTATTTGGAGACAGTCTTCTGGAGACTGTTTCAGAAGATTTCACCTGTCTGCCCTTATTCCTTGCAAATG
GAGCAGAGTCTAACACAGCAATAATTGGAACTTGGTTTCAGAAAACCTTTGACTGTTATTTCAGTCCTTT
AGCAATCAATGCATTTAATCTTTCCTGGATGGCTGCCATGTGGACTGCATGCAAAATGGACCATTATGTG
GCTACTACTGAATTTCTTTGGTCTGTACCCTGTAGCCCTCAAAGTCTGGACATTTCTTTCGCAATACATC
CAGAGGATGCAAAAGCTCTATGGGACAGTGTCCACAAAACACCTGGGGAGGTTACCCAGGAAGAAGTTGA
CCTATTCATGGATTGCCTTTATTCACATTTCCATAGACATTTCAAAATTCATTTATCAGCCACAAGATTA
GTTCGTGTTTCAACATCTGTAGCTTCAGCACATACTGATGGAAAAATAAAGATTCTGTGTCATAAATACC
TTATTGGAGTGTTAGCATATTTGACAGAACTGGCAATTTTTCAAATTGAGTGA

Translation (390 aa):
MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHK
QWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQ
GLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTGWFCC
VFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYV
ATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRL
VRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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