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Report for CCDS44388.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44388.2 Public Homo sapiens 10 DRGX 24 110 108 CCDS HistoryNCBI Gene:644168Re-query CCDS DB by CCDS ID:44388.2Re-query CCDS DB by GeneID:644168See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 44388.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. This updated representation lacks full-length transcript support and it therefore has an inferred exon combination; the inferred structure is supported by a combination of tiled EST alignments and RNA-Seq data, and by homologous transcript alignments.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44388.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374139.8 ENSP00000363254.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374139.8Link to Ensembl Protein Viewer:ENSP00000363254.1Re-query CCDS DB by Nucleotide ID:ENST00000374139Re-query CCDS DB by Protein ID:ENSP00000363254
Original member Current member NCBI NM_001276451.2 NP_001263380.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276451.2Link to Protein Sequence:NP_001263380.1Re-query CCDS DB by Nucleotide ID:NM_001276451Re-query CCDS DB by Protein ID:NP_001263380Link to BLAST:NP_001263380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263380.1 263 A6NNA5 263 100% 0 0

Chromosomal Locations for CCDS 44388.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49366116 49366381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49386478 49386590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49386680 49386858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49390133 49390234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49391164 49391261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49395407 49395440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGTTTTATTTCCACTGCCCGCCACAGCTAGAGGGCACTGCAACCTTTGGCAATCACTCTTCGGGGGATT
TTGATGACGGGTTTCTGCGTAGAAAACAGCGCCGGAACCGGACGACGTTCACTCTTCAGCAGCTGGAAGC
TCTCGAGGCCGTTTTTGCCCAAACACACTATCCAGATGTCTTCACCAGAGAAGAGCTCGCCATGAAAATA
AACCTCACAGAAGCCAGAGTGCAGGTTTGGTTCCAGAACAGAAGGGCCAAATGGAGGAAGACAGAGAGAG
GGGCCTCAGACCAGGAGCCAGGAGCCAAGGAGCCCATGGCAGAGGTGACACCTCCTCCAGTGAGAAACAT
CAACTCCCCGCCCCCTGGGGACCAAGCCCGGAGTAAGAAGGAGGCGCTGGAGGCCCAGCAGAGCCTGGGG
CGAACGGTAGGTCCTGCAGGGCCTTTCTTCCCCTCCTGCTTGCCGGGGACTCTCCTGAACACGGCCACCT
ACGCCCAGGCCTTGTCCCATGTGGCTTCCCTCAAAGGGGGCCCACTGTGCTCTTGCTGCGTCCCAGACCC
CATGGGACTCTCCTTCCTTCCCACCTATGGCTGCCAGAGTAACCGCACGGCCAGCGTGGCCACCCTGCGC
ATGAAGGCCCGCGAGCACTCAGAAGCTGTCCTGCAGTCAGCCAACCTCCTGCCTTCCACCAGCAGCAGCC
CCGGCCCTGTCGCCAAGCCGGCGCCCCCAGATGGCAGCCAGGAAAAGACCTCTCCCACCAAGGAACAGAG
CGAGGCAGAGAAGAGTGTATGA

Translation (263 aa):
MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKI
NLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLG
RTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLR
MKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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