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Report for CCDS4467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4467.1 Public Homo sapiens 5 TRIM52 24 110 108 CCDS HistoryNCBI Gene:84851Re-query CCDS DB by CCDS ID:4467.1Re-query CCDS DB by GeneID:84851See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611618.1 ENSP00000483005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611618.1Link to Ensembl Protein Viewer:ENSP00000483005.1Re-query CCDS DB by Nucleotide ID:ENST00000611618Re-query CCDS DB by Protein ID:ENSP00000483005
Original member Current member NCBI NM_032765.4 NP_116154.1 Accepted alive Link to Nucleotide Sequence:NM_032765.4Link to Protein Sequence:NP_116154.1Re-query CCDS DB by Nucleotide ID:NM_032765Re-query CCDS DB by Protein ID:NP_116154Link to BLAST:NP_116154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116154.1 297 Q96A61-1 297 100% 0 0

Chromosomal Locations for CCDS 4467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181257414 181257494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181260001 181260813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCTGGTTATGCCACTACTCCCAGCCCCATGCAGACCCTTCAGGAGGAAGCGGTGTGTGCCATCTGCT
TGGATTACTTCAAGGACCCCGTGTCCATCAGCTGTGGGCACAACTTCTGCCGAGGGTGTGTGACCCAGCT
GTGGAGTAAGGAGGACGAGGAGGACCAGAACGAGGAGGAAGATGAATGGGAGGAGGAGGAGGACGAGGAA
GCGGTGGGGGCCATGGATGGATGGGACGGCTCCATTCGAGAGGTGTTGTATCGGGGGAATGCTGACGAAG
AGTTGTTCCAAGACCAAGATGACGATGAACTCTGGCTCGGTGACAGTGGTATAACTAATTGGGACAACGT
AGACTATATGTGGGACGAGGAGGAAGAAGAAGAAGAGGAAGATCAGGACTATTACCTAGGAGGCTTGAGA
CCTGACCTGAGAATTGATGTCTACCGAGAAGAAGAAATACTGGAAGCATACGATGAGGACGAAGATGAAG
AGCTGTATCCTGACATCCACCCGCCTCCTTCCTTGCCCCTTCCAGGGCAGTTCACCTGCCCCCAGTGCCG
AAAGAGCTTTACACGTCGCAGCTTTCGTCCCAACTTGCAGCTGGCCAACATGGTCCAGATAATTCGCCAG
ATGTGCCCCACTCCTTATCGGGGAAACCGGAGTAATGATCAGGGCATGTGCTTTAAACACCAGGAAGCCC
TGAAACTCTTCTGTGAGGTGGACAAAGAGGCCATCTGTGTGGTGTGCCGAGAATCCAGGAGCCACAAACA
GCACAGCGTGCTGCCTTTGGAGGAGGTGGTGCAGGAGTACCAGGAAATAAAGTTGGAAACAACTCTGGTG
GGAATACTTCAGATAGAGCAAGAAAGCATTCACAGCAAGGCCTATAATCAGTAA

Translation (297 aa):
MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEEDEWEEEEDEE
AVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYMWDEEEEEEEEDQDYYLGGLR
PDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQ
MCPTPYRGNRSNDQGMCFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLV
GILQIEQESIHSKAYNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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