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Report for CCDS44736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44736.1 Public Homo sapiens 11 CLDN25 24 110 108 CCDS HistoryNCBI Gene:644672Re-query CCDS DB by CCDS ID:44736.1Re-query CCDS DB by GeneID:644672See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 44736.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453129.3 ENSP00000396304.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453129.3Link to Ensembl Protein Viewer:ENSP00000396304.2Re-query CCDS DB by Nucleotide ID:ENST00000453129Re-query CCDS DB by Protein ID:ENSP00000396304
Original member Current member NCBI NM_001101389.1 NP_001094859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101389.1Link to Protein Sequence:NP_001094859.1Re-query CCDS DB by Nucleotide ID:NM_001101389Re-query CCDS DB by Protein ID:NP_001094859Link to BLAST:NP_001094859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094859.1 229 C9JDP6 229 100% 0 0

Chromosomal Locations for CCDS 44736.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113779796 113780485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCCTGGAGTTTCCGTGCAAAAGTCCAGCTCGGGGGGCTACTTCTCTCCCTCCTTGGCTGGGTCTGCT
CCTGTGTTACCACCATCCTGCCCCAGTGGAAGACTCTTAATCTGGAACTGAACGAGATGGAGACCTGGAT
CATGGGGATTTGGGAGGTCTGCGTGGATCGAGAGGAAGTCGCCACTGTGTGCAAGGCCTTTGAATCCTTC
TTGTCTCTGCCCCAGGAGCTCCAGGTAGCCCGCATCCTCATGGTAGCCTCCCATGGGCTGGGCCTATTGG
GGCTTTTGCTCTGCAGCTTTGGGTCTGAATGCTTCCAGTTTCACAGGATCAGATGGGTATTCAAGAGGCG
GCTTGGTCTCCTGGGAAGGACTTTGGAGGCATCCGCTTCAGCCACTACCCTCCTTCCAGTCTCCTGGGTG
GCCCATGCCACAATCCAAGACTTCTGGGATGACAGCATCCCTGACATCATACCTCGGTGGGAGTTTGGAG
GTGCCCTCTACTTGGGCTGGGCTGCTGGTATTTTCCTGGCTCTTGGTGGGCTACTCCTCATCTTCTCGGC
CTGCCTGGGAAAAGAAGATGTGCCTTTTCCTTTGATGGCTGGTCCCACAGTCCCCCTATCCTGTGCTCCA
GTGGAGGAGTCAGATGGCTCCTTCCACCTCATGCTAAGACCTAGGAACCTGGTCATCTAG

Translation (229 aa):
MAWSFRAKVQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWIMGIWEVCVDREEVATVCKAFESF
LSLPQELQVARILMVASHGLGLLGLLLCSFGSECFQFHRIRWVFKRRLGLLGRTLEASASATTLLPVSWV
AHATIQDFWDDSIPDIIPRWEFGGALYLGWAAGIFLALGGLLLIFSACLGKEDVPFPLMAGPTVPLSCAP
VEESDGSFHLMLRPRNLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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