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Report for CCDS45176.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45176.2 Public Homo sapiens 14 CEP170B 24 110 108 CCDS HistoryNCBI Gene:283638Re-query CCDS DB by CCDS ID:45176.2Re-query CCDS DB by GeneID:283638See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 45176.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45176.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000556508.5 ENSP00000451249.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556508.5Link to Ensembl Protein Viewer:ENSP00000451249.1Re-query CCDS DB by Nucleotide ID:ENST00000556508Re-query CCDS DB by Protein ID:ENSP00000451249
Original member Current member NCBI NM_015005.3 NP_055820.2 Accepted alive Link to Nucleotide Sequence:NM_015005.3Link to Protein Sequence:NP_055820.2Re-query CCDS DB by Nucleotide ID:NM_015005Re-query CCDS DB by Protein ID:NP_055820Link to BLAST:NP_055820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055820.2 1519 Q9Y4F5-3 1519 100% 0 0

Chromosomal Locations for CCDS 45176.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 104877900 104877963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104878443 104878501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104880287 104880425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104882728 104882832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104883035 104883508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104883831 104884549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104885369 104885542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104886040 104886130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104886275 104887978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104889515 104889758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104892976 104893135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104893523 104893666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104893761 104893849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104894285 104894378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104894537 104894588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104894711 104894958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4560 nt):
ATGCGCATCCCGGACCAGAAGTACGTCACGCTGAAGCTCAACGATGTCATCCGCTTCGGCTACGATTCCA
ACATGTATGTGCTGGAGCGTGTGCAGCACCGAGTCCCGGAGGAGGCACTCAAGCATGAAAAGTACACCAG
CCAGCTGCAGGTGAGCGTGAAGGGTTTGGCGCCCAAGAGGAGCGAGGCACTGCCGGAACACACACCATAC
TGCGAGGCCTCGAACCCCAGGCCGGAGAAGGGGGACCGGAGACCAGGAACAGAGGCAGCCTCTTACCGCA
CACCCCTGTATGGGCAGCCCTCCTGGTGGGGTGAGGACGATGGTAGCACGCTGCCTGACGCCCAGCGCCA
GGGAGAGCCCTACCCAGAGCGCCCCAAGGGACCAGTGCAGCAGGACGGGGAGCTCCACGGCTTCCGCGCC
CCTGCTGAGCCTCAGGGCTGCTCGTTCCGGCGGGAGCCCAGCTACTTCGAGATCCCCACGAAGGAGACCC
CGCAGCCGTCGCAGCCCCCCGAGGTGCCGGCACACGAGATGCCCACGAAGGATGCAGAGGCAGGTGGGGG
CGGAGCGGCCCCTGTGGTGCAGAGCCACGCCTCCTTCACCATCGAGTTTGATGACTGCAGCCCTGGCAAG
ATGAAGATCAAGGACCATATCACCAAGTTTTCCCTGCGCCAGCGGCGGCCCCCGGGCAAGGAGGCCACAC
CTGGCGAGATGGTGTCGGCTGAGACCAAGGTGGCCGACTGGCTGGTGCAGAATGACCCGAGCCTGCTGCA
CCGGGTTGGCCCTGGGGATGACCGCCACAGCACCAAGAGCGACCTGCCTGTCCACACCCGCACCCTGAAG
GGCCACAAGCACGAGGACGGCACGCAGAGTGACTCAGAGGACCCCCTGGCCAAGGCGGCCTCGGCCGCTG
GGGTGCCCTTGGAGGCCAGCGGGGAGCAGGTGCGGCTGCAGAGGCAGATCAAGCGGGACCCCCAGGAGCT
ACTACATAACCAGCAGGCCTTTGTCATCGAGTTCTTCGACGAGGACACACCCCGAAAGAAGCGCTCCCAG
TCCTTCACGCACAGCCCGTCCGGGGACCCCAAGGCCGACAAGCGCCGTGGCCCAACGCCGGCCGATAGGG
ACCGCCCCAGTGTCCCAGCCCCAGTCCAGGCAGGGGGCCGCAGCTCGGGGCCACAGAGGGCCGGCTCGCT
CAAGCGGGAGAAGACAGAGGAACGGCTGGGCAGCCCCTCGCCCGCCTCCCGAACCCCTGCCCGCCCCTTC
GGAAGCGTGGGGCGCCGCTCCCGCCTGGCCCAGGACTTCATGGCCCAGTGTCTGCGGGAGAGCTCCCCGG
CCGCCCGGCCCAGCCCCGAGAAGGTTCCTCCGGTGCTGCCCGCTCCCCTGACACCCCATGGGACCAGCCC
CGTGGGCCCCCCGACCCCACCGCCCGCCCCCACGGACCCCCAGCTGACCAAGGCACGGAAACAGGAGGAG
GACGACAGCCTCAGTGACGCAGGGACATACACCATCGAGACCGAGGCGCAGGACACGGAGGTGGAGGAGG
CCCGGAAGATGATCGACCAGGTCTTTGGGGTGTTGGAGTCCCCTGAACTCTCCAGGGCATCTTCGGCCAC
CTTTCGCCCAGTCATCAGAGGGGACAGAGATGAGTCTGATGACGGGGGCGTGGCCCAGCGGATGGCGCTA
CTGCAGGAGTTTGCCTCCCGGCCACTGGGTGCGGCCCCCCAGGCGGAGCACCAGGGCCTCCCGGTGCCGG
GCTCCCCTGGGGGTCAGAAGTGGGTGTCCCGCTGGGCCAGCCTGGCTGACAGCTACTCAGACCCGGGCCT
CACAGAGGATGGCCTGGGACGTAGAGGCGGGGAGCCGGAGGGGTCCCTGCCTGTGCGCATGCGGCGACGG
CTCCCTCAGCTGCCCAGTGAGAGGGCTGACAGCCCTGCGGGCCCAGAGAGCAGCAGGAGGAGTGGGCCTG
GGCCACCGGAGCTGGACAGTGAGCAGCCCAGCCGCCTCTTCGGCCAGGAGGAGTTGGATCCTGACAGCCT
CAGCGATGCCAGTGGGTCGGACGGGGGCCGAGGCCCCGAGCCAGGGGTGGAGCCACAGGACAGCAGACGC
AGGAGCCCCCAGGAGGGGCCCACGTGGAGCAGGGGTCGGCGCTCACCAAGGGCCCCCGGGGAGCCAACTC
CCGCCTCTTTCTTCATTGGGGACCAGAATGGGGACGCTGTGTTATCTAGGAAACCGCTTGCGGCTCCAGG
GGATGGGGAGGGCCTAGGGCAGACAGCCCAGCCCAGCCCCCCAGCACGGGATGGCGTCTATGTCAGTGCC
AATGGGAGAATGGTCATCCAGCTACGGCCTGGACGGTCCCCAGAACCCGACGGCCCTGCCCCAGCCTTTC
TCCGGCAAGAGAGCTTCACTAAGGAGCCAGCCAGTGGTCCCCCAGCGCCCGGCAAGCCCCCCCACATCTC
CAGCCACCCGCTTCTACAGGACCTGGCCGCTACCCGGGCCGCACGCATGGACTTCCACTCCCAGGACACC
CACCTGATCTTGAAGGAGACGGAGACGGCCCTGGCGGCCCTGGAGGCCCGACTCCTCTCTAATTCTGTGG
ATGCCGAGTGTGAGGGGGGCAGCACCCCGAGGCCGCCGGAGGACGCCCTGTCTGGGGACTCGGACGTGGA
CACAGCCAGCACCGTCAGCCTGCGTAGTGGCAAGAGCGGGCCCAGCCCCACAACCCCCCAGCCTCTGCGG
GCACAGAAGGAGATGTCGCCATCCCCGCCAGCTGCACAGGACCCGGGAGGCACCGCCCTGGTCAGTGCCC
GTGAGCAGTCCTCAGAGAGGCAGCATCACCCACTTGGCCCGACGGACATGGGCCGTGGAGAGCCGGTACG
GCGCTCAGCCATAAGGCGTGGCCACAGGCCCCGAGGGTCCCTGGATTGGCCCAGTGAGGAGCGTGGCCCT
GTCCTCGCCCACCTACCCAGCTCAGATGTGATGGCCTCCAACCACGAAACCCCTGAGGCCACCGGGGCAG
GACGGCTAGGTTCTCGCCGGAAACCAGCGGCCCCACCGCCATCCCCAGCTGCCCGGGAGGAGCAGAGCCG
TAGCTCAGCCAGCTCCCAGAAGGGGCCGCAGGCCTTGACCCGCTCCAACAGCCTGTCCACCCCTCGCCCC
ACACGGGCCTCCCGGCTGAGGCGGGCCCGGCTGGGGGACGCTTCAGACACTGAGGCTGCGGATGGTGAGC
GGGGGTCCCTGGGCAACCCTGAGCCCGTGGGCCGGCCAGCTGCTGAGCAGGCCAAGAAGCTGTCACGCCT
GGACATCCTGGCCATGCCCCGGAAGCGGGCCGGCTCCTTCACAGGGACTAGTGACCCCGAGGCAGCCCCT
GCCCGCACCAGCTTCTCTGGCCGCAGTGTGGAGTTGTGCTGTGCCAGCCGCAAGCCCACCATGGCCGAAG
CACGGGCTGTCTCCAGGAAGGCTGCCAACACAGCCACCACCACGGGTCCCCGCCAGCCCTTCAGCAGGGC
CCGCTCAGGCAGTGCCCGATACACCTCCAACACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACC
TCTGAGGAGGAGTACGGCTCCCGCCACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCCACTC
AGACCCCGAGGGCTGGCAGCTCCAGCCGGGCTCGTTCCCGGGCCCCCGGCCCCCGGGACACGGACGACGA
TGAGGAGGAGCCTGACCCTTATGGTTTCATCGTGCAGACGGCAGAGATTGCGGAGATTGCCAGGCTGAGC
CAGACGCTGGTGAAGGACGTGGCCATCCTAGCCCAGGAGATCCACGATGTGGCTGGGGACGGTGACACAC
TGGGCTCCTCGGAGCCTGCCCACAGCGCCTCCCTCAGCAACATGCCCAGCACCCCCGCCTCGACCATCTC
TGCCCGGGAGGAGCTGGTGCAGCGCATCCCCGAGGCCAGCCTCAACTTCCAGAAGGTGCCGCCCGGCTCG
CTGAACTCTCGGGACTTTGACCAGAACATGAACGACAGCTGTGAGGACGCCCTGGCCAACAAGACGCGGC
CTCGGAACCGAGAGGAGGTGATCTTCGATAACCTGATGCTGAACCCGGTGTCCCAGCTGTCGCAGGCCAT
CCGTGAGAACACAGAGCACCTTGCCGAGAAGATGAAGATCCTCTTTCAGAACACAGGGAGAGCTTGGGAG
GACCTGGAAGCCAGGATCAACGCCGAGAACGAGGTGCCCATCCTGAAGACATCTAACAAGGAAATCAGCT
CCATCCTGAAGGAACTGAGGCGGGTGCAGAAACAGCTGGAAGTTATCAATGCCATCGTGGACCCCAGTGG
GAGCCTGGACCTGCTCACAGGAAACAGGAGCTTGGCCAGCTCTGCACAGCCGGGGCTGGGGAAGGGCCGC
GTGGCTGCCCAGAGCCCACCCTCACCCGCCTCAGCCGAGGCCCTGCTGCCAGCCCTGCCCCTGAGGAATT
TCCCACAGCGGGCCAGCTGTGGGCCTCCCAGCCTCCCGGACCCCACCTTCCTCCCTGATGCCGAGAGGTT
CCTGATCTAG

Translation (1519 aa):
MRIPDQKYVTLKLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKGLAPKRSEALPEHTPY
CEASNPRPEKGDRRPGTEAASYRTPLYGQPSWWGEDDGSTLPDAQRQGEPYPERPKGPVQQDGELHGFRA
PAEPQGCSFRREPSYFEIPTKETPQPSQPPEVPAHEMPTKDAEAGGGGAAPVVQSHASFTIEFDDCSPGK
MKIKDHITKFSLRQRRPPGKEATPGEMVSAETKVADWLVQNDPSLLHRVGPGDDRHSTKSDLPVHTRTLK
GHKHEDGTQSDSEDPLAKAASAAGVPLEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDEDTPRKKRSQ
SFTHSPSGDPKADKRRGPTPADRDRPSVPAPVQAGGRSSGPQRAGSLKREKTEERLGSPSPASRTPARPF
GSVGRRSRLAQDFMAQCLRESSPAARPSPEKVPPVLPAPLTPHGTSPVGPPTPPPAPTDPQLTKARKQEE
DDSLSDAGTYTIETEAQDTEVEEARKMIDQVFGVLESPELSRASSATFRPVIRGDRDESDDGGVAQRMAL
LQEFASRPLGAAPQAEHQGLPVPGSPGGQKWVSRWASLADSYSDPGLTEDGLGRRGGEPEGSLPVRMRRR
LPQLPSERADSPAGPESSRRSGPGPPELDSEQPSRLFGQEELDPDSLSDASGSDGGRGPEPGVEPQDSRR
RSPQEGPTWSRGRRSPRAPGEPTPASFFIGDQNGDAVLSRKPLAAPGDGEGLGQTAQPSPPARDGVYVSA
NGRMVIQLRPGRSPEPDGPAPAFLRQESFTKEPASGPPAPGKPPHISSHPLLQDLAATRAARMDFHSQDT
HLILKETETALAALEARLLSNSVDAECEGGSTPRPPEDALSGDSDVDTASTVSLRSGKSGPSPTTPQPLR
AQKEMSPSPPAAQDPGGTALVSAREQSSERQHHPLGPTDMGRGEPVRRSAIRRGHRPRGSLDWPSEERGP
VLAHLPSSDVMASNHETPEATGAGRLGSRRKPAAPPPSPAAREEQSRSSASSQKGPQALTRSNSLSTPRP
TRASRLRRARLGDASDTEAADGERGSLGNPEPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSDPEAAP
ARTSFSGRSVELCCASRKPTMAEARAVSRKAANTATTTGPRQPFSRARSGSARYTSNTRRRQQGSDYTST
SEEEYGSRHGSPKHTRSHTSTATQTPRAGSSSRARSRAPGPRDTDDDEEEPDPYGFIVQTAEIAEIARLS
QTLVKDVAILAQEIHDVAGDGDTLGSSEPAHSASLSNMPSTPASTISAREELVQRIPEASLNFQKVPPGS
LNSRDFDQNMNDSCEDALANKTRPRNREEVIFDNLMLNPVSQLSQAIRENTEHLAEKMKILFQNTGRAWE
DLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSGSLDLLTGNRSLASSAQPGLGKGR
VAAQSPPSPASAEALLPALPLRNFPQRASCGPPSLPDPTFLPDAERFLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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