NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45478.1 Public Homo sapiens 16 GPT2 24 110 108 CCDS HistoryNCBI Gene:84706Re-query CCDS DB by CCDS ID:45478.1Re-query CCDS DB by GeneID:84706See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440783.2 ENSP00000413804.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440783.2Link to Ensembl Protein Viewer:ENSP00000413804.2Re-query CCDS DB by Nucleotide ID:ENST00000440783Re-query CCDS DB by Protein ID:ENSP00000413804
Original member Current member NCBI NM_001142466.3 NP_001135938.1 Accepted alive Link to Nucleotide Sequence:NM_001142466.3Link to Protein Sequence:NP_001135938.1Re-query CCDS DB by Nucleotide ID:NM_001142466Re-query CCDS DB by Protein ID:NP_001135938Link to BLAST:NP_001135938.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135938.1 423 Q8TD30-2 423 100% 0 0

Chromosomal Locations for CCDS 45478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 46897705 46897737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46900682 46900790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46906842 46906975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46909684 46909927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46916628 46916707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46918621 46918757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46922242 46922416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46924389 46924544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46926925 46927037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46928907 46928997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGGGCAGCAGCCAATCACCTTCCTCCGGCAGGTGATGGCACTATGCACCTACCCAAACCTGCTGGACA
GCCCCAGCTTCCCAGAAGATGCTAAGAAACGTGCCCGGCGGATCCTGCAGGCTTGTGGCGGGAACAGCCT
GGGGTCCTACAGTGCTAGCCAGGGTGTCAACTGCATCCGTGAAGATGTGGCTGCCTACATCACCAGGAGG
GATGGCGGTGTGCCTGCGGACCCCGACAACATCTACCTGACCACGGGAGCTAGTGACGGCATTTCTACGA
TCCTGAAGATCCTCGTCTCCGGGGGCGGCAAGTCACGGACAGGTGTGATGATCCCCATCCCACAATATCC
CCTCTATTCAGCTGTCATCTCTGAGCTCGACGCCATCCAGGTGAATTACTACCTGGACGAGGAGAACTGC
TGGGCGCTGAATGTGAATGAGCTCCGGCGGGCGGTGCAGGAGGCCAAAGACCACTGTGATCCTAAGGTGC
TCTGCATAATCAACCCTGGGAACCCCACAGGCCAGGTACAAAGCAGAAAGTGCATAGAAGATGTGATCCA
CTTTGCCTGGGAAGAGAAGCTCTTTCTCCTGGCTGATGAGGTGTACCAGGACAACGTGTACTCTCCAGAT
TGCAGATTCCACTCCTTCAAGAAGGTGCTGTACGAGATGGGGCCCGAGTACTCCAGCAACGTGGAGCTCG
CCTCCTTCCACTCCACCTCCAAGGGCTACATGGGCGAGTGTGGTTACAGAGGAGGCTACATGGAGGTGAT
CAACCTGCACCCTGAGATCAAGGGCCAGCTGGTGAAGCTGCTGTCGGTGCGCCTGTGCCCCCCAGTGTCT
GGGCAGGCCGCCATGGACATTGTCGTGAACCCCCCGGTGGCAGGAGAGGAGTCCTTTGAGCAATTCAGCC
GAGAGAAGGAGTCGGTCCTGGGTAATCTGGCCAAAAAAGCAAAGCTGACGGAAGACCTGTTTAACCAAGT
CCCAGGAATTCACTGCAACCCCTTGCAGGGGGCCATGTACGCCTTCCCTCGGATCTTCATTCCTGCCAAA
GCTGTGGAGGCTGCTCAGGCCCATCAAATGGCTCCAGACATGTTCTACTGCATGAAGCTCCTGGAGGAGA
CTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAGAGGGAAGGCACTTACCACTTCAGGATGACTAT
CCTCCCTCCAGTGGAGAAGCTGAAAACGGTGCTGCAGAAGGTGAAAGACTTCCACATCAACTTCCTGGAG
AAGTACGCGTGA

Translation (423 aa):
MGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR
DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENC
WALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD
CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVS
GQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAK
AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLE
KYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH