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Report for CCDS45664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45664.1 Public Homo sapiens 17 ARL5C 24 110 108 CCDS HistoryNCBI Gene:390790Re-query CCDS DB by CCDS ID:45664.1Re-query CCDS DB by GeneID:390790See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 45664.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269586.12 ENSP00000269586.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269586.12Link to Ensembl Protein Viewer:ENSP00000269586.7Re-query CCDS DB by Nucleotide ID:ENST00000269586Re-query CCDS DB by Protein ID:ENSP00000269586
Original member Current member NCBI NM_001143968.1 NP_001137440.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143968.1Link to Protein Sequence:NP_001137440.1Re-query CCDS DB by Nucleotide ID:NM_001143968Re-query CCDS DB by Protein ID:NP_001137440Link to BLAST:NP_001137440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137440.1 179 A6NH57 179 100% 0 0

Chromosomal Locations for CCDS 45664.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39156894 39156942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39160591 39160742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39161268 39161351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39162711 39162858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39165079 39165139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39165715 39165760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGACAGCTGATCGCCAAGTTAATGAGCATCTTCGGGAACCAGGAGCACACGGTCATCATCGTGGGAC
TG
GACAATGAAGGAAAGACCACCATTCTCTACCGGTTCTTGACCAATGAGGTGGTCCATATGTGTCCCAC
C
ATTGGCAGCAACGTGGAGGAGATCATTCTGCCGAAGACCCACTTCTTCATGTGGGACATAGTGAGACCT
GAG
GCTCTGAGCTTTATCTGGAACACATACTACTCCAACACTGAGTTTATCATCCTTGTGATTGACAGCA
CG
GACCGGGATCGGCTGCTGACCACTCGGGAGGAGCTATATAAAATGCTGGCCCATGAGGCTCTACAGGA
T
GCTTCAGTCCTGATATTTGCCAATAAGCAGGACGTGAAGGACTCCATGAGGATGGTGGAGATCTCCCAT
TTC
CTTACTCTCAGCACCATCAAAGACCACTCGTGGCATATACAAGGCTGCTGTGCCCTCACCAGGGAAG
G
G
CTGCCTGCCAGACTTCAGTGGATGGAATCTCAGGCCGCTGCTAACTGA


Translation (179 aa):
MGQLIAKLMSIFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVHMCPTIGSNVEEIILPKTHFFMWDIVRP
E
ALSFIWNTYYSNTE
FIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISH
F
LTLSTIKDHSWHIQGCCALTRE
GLPARLQWMESQAAAN



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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