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Report for CCDS45799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45799.1 Public Homo sapiens 17 TNRC6C 24 110 108 CCDS HistoryNCBI Gene:57690Re-query CCDS DB by CCDS ID:45799.1Re-query CCDS DB by GeneID:57690See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000696270.1 ENSP00000512514.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000696270.1Link to Ensembl Protein Viewer:ENSP00000512514.1Re-query CCDS DB by Nucleotide ID:ENST00000696270Re-query CCDS DB by Protein ID:ENSP00000512514
Original member Current member NCBI NM_001395508.1 NP_001382437.1 Accepted alive Link to Nucleotide Sequence:NM_001395508.1Link to Protein Sequence:NP_001382437.1Re-query CCDS DB by Nucleotide ID:NM_001395508Re-query CCDS DB by Protein ID:NP_001382437Link to BLAST:NP_001382437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382437.1 1726 Q9HCJ0-2 1726 100% 0 0

Chromosomal Locations for CCDS 45799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78004207 78004269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78005058 78005079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78031516 78031842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78048845 78051448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78064722 78064937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78067757 78067923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78071085 78071165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78073037 78073094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78075136 78075278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78077185 78077334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78079395 78079541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78083047 78083166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78086503 78086586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78086853 78087093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78091440 78091607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78092933 78093124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78093620 78093763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78097745 78097861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78098343 78098537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78102474 78102544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78103414 78103553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78104485 78104845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5811 nt):
ATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGAAAAGAAAAAGAAGGAAGGTGCTCAGAAAAAGGCTGCTG
ATCAAAAAACCAAAGTGCCAGAACCTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTAC
CAGTACTTCCACCAGCACTATCTCAAGCAGCAACAATGGCAAACGTGCATCTGCCAGTGGCCAGCAGCCA
GCTGCATCCCGTTACCTGCCTCGTGAGGTGCCTCCACGCTTCCGCCAGCAAGAACAGAAGCAGCTATTAA
AGAGAGGCCAGCCATTGCCTACGGGGACTCTAACCAGTGTGAGCCCAACCCAGGGTGCTGGGCCTGCAGG
GGTAAGCCCACCTCCCCTACCTGGAGCCGGAACACAGCATCATCCCAGTAAGCTCCAACCAGATCTCAGT
CATAGTGGATTGGCAGATCATTATGAAAATTCCCACTGGGGACAGCAGCCTACTTACAGAAGCGAAGCCA
ACTGCAGCTGGGATAAAGTGATAATAGATAGGACTGACAAGGAGGCGTGGCCTTCCATCACAGGAACAGA
GACTGAATCTGCCTCAGAATGTACTACAGACACTGACTCTGCCTCCAACTGTGGCTCAGAGAACAGTAGC
ATGGCTACAGGGAGTGCCCAGGGCAACTTCACTGGACATACCAAGAAGACAAATGGCAATAATGGCACCA
ATGGCGCACTCGTCCAAAGCCCTTCTAATCAGAGTGCCCTTGGAGCAGGGGGAGCGAACAGTAATGGAAG
TGCGGCCAGAGTGTGGGGTGTAGCCACAGGCTCCAGCTCTGGCCTGGCTCACTGCTCTGTCAGTGGTGGG
GATGGAAAAATGGACACTATGATTGGAGATGGGAGAAGTCAGAATTGCTGGGGTGCTTCCAACTCCAATG
CTGGCATTAATCTTAACCTTAATCCTAATGCCAACCCAGCTGCCTGGCCTGTACTTGGACATGAAGGAAC
CGTGGCGACAGGCAACCCTTCCAGTATTTGCAGTCCAGTCAGTGCCATAGGTCAAAATATGGGCAACCAG
AACGGGAACCCAACAGGCACTTTAGGTGCTTGGGGAAACTTGCTGCCACAAGAGAGCACAGAACCACAAA
CGTCCACTTCTCAGAATGTGTCTTTCAGCGCACAACCTCAGAACCTTAACACTGATGGACCAAATAACAC
TAACCCCATGAACTCTTCACCCAACCCTATCAATGCAATGCAGACAAATGGACTGCCAAACTGGGGCATG
GCTGTTGGTATGGGGGCCATCATCCCGCCCCACCTGCAAGGCCTTCCTGGTGCTAATGGATCATCAGTTT
CTCAAGTCAGTGGGGGCAGTGCTGAAGGAATAAGCAATTCTGTGTGGGGACTGTCCCCAGGTAACCCTGC
CACAGGAAATAGCAATTCTGGGTTCAGTCAGGGGAATGGAGACACTGTGAACTCAGCATTAAGTGCTAAA
CAAAATGGATCCAGCAGTGCTGTGCAAAAGGAAGGAAGTGGAGGAAATGCTTGGGATTCAGGACCTCCTG
CTGGTCCTGGAATACTCGCCTGGGGAAGGGGCAGTGGCAACAATGGCGTTGGTAATATCCATTCAGGAGC
TTGGGGCCACCCCAGCCGAAGCACCTCTAACGGTGTGAATGGGGAATGGGGAAAGCCCCCAAACCAGCAT
TCCAACAGTGACATCAATGGGAAAGGATCAACAGGGTGGGAGAGTCCTAGTGTCACCAGCCAGAACCCTA
CCGTACAGCCTGGTGGTGAACACATGAACTCCTGGGCCAAAGCGGCATCTTCTGGAACTACAGCAAGTGA
AGGAAGTAGTGATGGTTCTGGCAACCACAATGAAGGAAGCACTGGGAGGGAAGGAACGGGAGAAGGCCGA
AGGCGAGATAAAGGGATTATAGACCAAGGGCACATCCAGTTGCCAAGGAATGATCTTGACCCAAGAGTTC
TGTCTAATACTGGTTGGGGACAGACTCCTGTAAAGCAAAACACTGCCTGGGAATTTGAAGAATCCCCTAG
GTCTGAAAGGAAAAATGACAATGGGACAGAGGCCTGGGGTTGTGCAGCTACTCAGGCTTCAAACTCAGGG
GGGAAGAACGATGGGTCCATCATGAACAGTACAAATACCTCTTCAGTATCTGGGTGGGTCAACGCGCCAC
CTGCCGCTGTGCCAGCAAACACAGGTTGGGGAGACAGCAACAACAAAGCGCCAAGTGGCCCGGGGGTTTG
GGGGGACTCGATAAGCTCTACTGCTGTTAGTACTGCTGCTGCTGCCAAGAGTGGCCATGCTTGGAGTGGG
GCCGCAAATCAGGAGGACAAGTCACCCACCTGGGGTGAGCCTCCAAAGCCCAAATCCCAACACTGGGGAG
ATGGACAAAGATCAAATCCAGCCTGGAGTGCAGGAGGGGGAGATTGGGCAGATTCATCGTCTGTCCTTGG
ACACTTGGGGGATGGGAAAAAAAATGGATCTGGATGGGATGCTGACAGTAATAGGTCAGGGTCTGGTTGG
AATGACACCACGAGATCTGGGAACAGTGGCTGGGGCAACAGCACAAATACAAAGGCCAATCCAGGTACAA
ACTGGGGGGAGACTTTAAAACCTGGCCCCCAACAGAACTGGGCTAGCAAACCCCAAGACAACAATGTGAG
TAACTGGGGAGGAGCTGCTTCTGTGAAACAGACAGGAACAGGGTGGATCGGGGGGCCGGTACCGGTCAAA
CAGAAGGACAGCAGTGAAGCAACTGGCTGGGAAGAACCCTCTCCACCGTCCATTCGCCGCAAAATGGAAA
TTGATGATGGTACCTCAGCTTGGGGGGACCCAAGCAACTATAACAATAAAACTGTAAACATGTGGGATAG
AAACAACCCGGTCATCCAGAGCAGTACCACGACCAATACCACCACCACCACCACCACTACCACGAGCAAC
ACCACACACAGGGTCGAGACGCCGCCCCCGCACCAGGCCGGTACTCAGCTGAATCGATCACCGTTGCTTG
GTCCAGTTTCATCAGGCTGGGGAGAAATGCCTAATGTTCACTCAAAGACTGAAAACTCTTGGGGAGAACC
ATCCTCCCCTTCTACCCTGGTGGATAATGGCACAGCAGCATGGGGGAAGCCACCCAGCAGTGGCAGCGGG
TGGGGAGATCACCCTGCAGAGCCGCCGGTGGCATTTGGAAGAGCTGGCGCACCTGTTGCTGCCTCAGCCC
TGTGCAAACCAGCTTCAAAATCTATGCAAGAAGGCTGGGGCAGTGGTGGGGATGAAATGAACCTCAGTAC
CAGCCAGTGGGAGGATGAAGAAGGGGACGTGTGGAATAATGCTGCTTCCCAAGAAAGCACCTCCTCCTGC
AGCTCCTGGGGGAACGCCCCCAAAAAAGGACTTCAAAAGGGCATGAAGACGTCTGGCAAGCAGGATGAGG
CCTGGATCATGAGCCGGCTGATCAAACAACTCACAGACATGGGCTTCCCGAGAGAGCCAGCTGAGGAGGC
CTTGAAGAGTAACAATATGAATCTTGATCAGGCCATGAGCGCTCTGCTGGAAAAGAAGGTGGACGTGGAC
AAGCGTGGGCTGGGAGTGACCGACCATAATGGAATGGCCGCCAAGCCCCTCGGCTGCCGCCCGCCAATCT
CCAAAGAGTCTTCCGTGGACCGCCCCACCTTTCTTGACAAGGATGGCGGCCTCGTGGAAGAGCCCACGCC
TTCACCGTTCTTGCCTTCCCCAAGCCTGAAGCTCCCCCTTTCACACAGTGCACTCCCCAGTCAGGCCCTG
GGTGGGATTGCCTCCGGGCTGGGCATGCAAAACTTGAATTCTTCTAGACAGATACCGAGTGGCAATCTGG
GTATGTTTGGCAATAGTGGAGCAGCACAAGCCAGGACCATGCAGCAGCCGCCACAGCCACCAGTGCAGCC
TCTTAACTCTTCCCAGCCCAGTCTCCGTGCTCAAGTGCCTCAGTTTCTATCCCCTCAGGTTCAAGCACAG
CTTTTGCAGTTTGCAGCAAAAAACATTGGTCTCAACCCTGCACTATTAACCTCGCCAATTAATCCTCAAC
ATATGACGATGTTGAACCAGCTCTATCAGCTGCAGCTGGCATACCAACGTTTACAAATCCAGCAGCAGAT
GTTACAGGCCCAGCGTAATGTGTCCGGATCCATGAGACAACAGGAGCAGCAAGTTGCGCGCACAATCACT
AATCTGCAGCAGCAGATCCAGCAGCACCAGCGCCAGCTGGCCCAGGCCCTGCTCGTGAAGCAGCCACCAC
CGCCACCGCCCCCGCCGCACCTGTCTCTGCACCCCTCTGCAGGCAAATCGGCCATGGACAGCTTCCCCTC
GCACCCACAGACTCCCGGCCTACCTGACCTGCAGACCAAAGAGCAGCAGTCTTCACCCAACACCTTTGCT
CCTTACCCTCTCGCTGGACTGAACCCAAACATGAATGTCAACAGCATGGACATGACCGGTGGCTTGTCGG
TGAAGGACCCATCCCAGTCCCAGTCACGCCTCCCCCAGTGGACGCACCCCAACTCCATGGATAACTTGCC
CAGTGCCGCTTCCCCCCTGGAGCAGAACCCTAGCAAGCATGGTGCTATCCCTGGAGGTCTAAGCATTGGG
CCTCCAGGTAAGTCCTCCATTGATGACTCCTATGGCCGGTACGATTTAATCCAGAACAGTGAGTCACCAG
CCAGTCCTCCCGTAGCTGTTCCCCATAGCTGGTCACGTGCCAAATCTGACAGTGATAAAATCTCAAATGG
CTCTAGCATCAACTGGCCCCCAGAATTCCATCCGGGAGTTCCATGGAAAGGACTGCAGAATATTGACCCT
GAGAATGACCCTGACGTCACTCCTGGCAGTGTCCCCACTGGGCCTACCATCAACACCACCATCCAGGATG
TCAACCGCTACCTCCTCAAGAGTGGAGGGTCCTCCCCGCCATCATCTCAGAATGCCACGCTGCCTTCTTC
GAGTGCCTGGCCACTCAGTGCCTCCGGCTACAGTAGCTCTTTCAGCAGCATTGCATCCGCACCTAGTGTT
GCAGGTAAACTGTCAGACATCAAATCGACGTGGTCCTCTGGCCCTACCTCCCACACGCAAGCCTCTCTGT
CTCATGAACTATGGAAGGTGCCCAGAAACAGTACTGCACCCACGAGGCCACCTCCAGGGTTAACCAATCC
CAAGCCCTCCTCCACCTGGGGTGCCAGCCCCCTCGGCTGGACCAGCTCCTACTCCTCGGGTTCTGCCTGG
AGCACCGACACCTCAGGAAGAACCAGCAGCTGGCTCGTTCTTCGAAACCTCACTCCCCAGATTGATGGTT
CTACACTGCGGACATTGTGTTTGCAACATGGGCCTCTTATCACATTCCACCTGAATCTGACTCAAGGCAA
TGCTGTGGTCCGGTACAGCTCCAAGGAGGAGGCTGCCAAGGCCCAGAAGTCTCTGCACATGTGCGTCCTG
GGAAACACTACCATCCTGGCCGAGTTCGCTGGTGAAGAAGAAGTGAATCGCTTCTTAGCCCAAGGCCAGG
CGCTGCCACCCACTTCCAGCTGGCAGTCCAGCAGCGCGTCCAGCCAGCCGCGGCTCAGCGCAGCGGGCAG
CTCCCATGGCCTGGTACGCAGCGACGCTGGCCACTGGAACGCCCCGTGCCTGGGTGGCAAGGGGAGCAGT
GAGCTGCTGTGGGGCGGGGTGCCCCAGTACTCCAGCAGCCTGTGGGGCCCGCCCAGCGCCGACGACAGCA
GGGTGATAGGCAGCCCCACGCCGCTAACCACCCTGCTGCCTGGGGACCTGCTCAGCGGGGAGTCCCTGTA
G

Translation (1936 aa):
MEEKKKKKQEEKKKKEGAQKKAADQKTKVPEPTKTCSSQPQPAGTSTSTSTSTISSSNNGKRASASGQQP
AASRYLPREVPPRFRQQEQKQLLKRGQPLPTGTLTSVSPTQGAGPAGVSPPPLPGAGTQHHPSKLQPDLS
HSGLADHYENSHWGQQPTYRSEANCSWDKVIIDRTDKEAWPSITGTETESASECTTDTDSASNCGSENSS
MATGSAQGNFTGHTKKTNGNNGTNGALVQSPSNQSALGAGGANSNGSAARVWGVATGSSSGLAHCSVSGG
DGKMDTMIGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNMGNQ
NGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSAQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQVSGGSAEGISNSVWGLSPGNPATGNSNSGFSQGNGDTVNSALSAK
QNGSSSAVQKEGSGGNAWDSGPPAGPGILAWGRGSGNNGVGNIHSGAWGHPSRSTSNGVNGEWGKPPNQH
SNSDINGKGSTGWESPSVTSQNPTVQPGGEHMNSWAKAASSGTTASEGSSDGSGNHNEGSTGREGTGEGR
RRDKGIIDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQASNSG
GKNDGSIMNSTNTSSVSGWVNAPPAAVPANTGWGDSNNKAPSGPGVWGDSISSTAVSTAAAAKSGHAWSG
AANQEDKSPTWGEPPKPKSQHWGDGQRSNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGW
NDTTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASKPQDNNVSNWGGAASVKQTGTGWIGGPVPVK
QKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPVIQSSTTTNTTTTTTTTTSN
TTHRVETPPPHQAGTQLNRSPLLGPVSSGWGEMPNVHSKTENSWGEPSSPSTLVDNGTAAWGKPPSSGSG
WGDHPAEPPVAFGRAGAPVAASALCKPASKSMQEGWGSGGDEMNLSTSQWEDEEGDVWNNAASQESTSSC
SSWGNAPKKGLQKGMKTSGKQDEAWIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD
KRGLGVTDHNGMAAKPLGCRPPISKESSVDRPTFLDKDGGLVEEPTPSPFLPSPSLKLPLSHSALPSQAL
GGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPPQPPVQPLNSSQPSLRAQVPQFLSPQVQAQ
LLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGSMRQQEQQVARTIT
NLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSAGKSAMDSFPSHPQTPGLPDLQTKEQQSSPNTFA
PYPLAGLNPNMNVNSMDMTGGLSVKDPSQSQSRLPQWTHPNSMDNLPSAASPLEQNPSKHGAIPGGLSIG
PPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDP
ENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPPSSQNATLPSSSAWPLSASGYSSSFSSIASAPSV
AGKLSDIKSTWSSGPTSHTQASLSHELWKVPRNSTAPTRPPPGLTNPKPSSTWGASPLGWTSSYSSGSAW
STDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVL
GNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSASSQPRLSAAGSSHGLVRSDAGHWNAPCLGGKGSS
ELLWGGVPQYSSSLWGPPSADDSRVIGSPTPLTTLLPGDLLSGESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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