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Report for CCDS45813.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45813.2 Public Homo sapiens 17 ARL16 24 110 108 CCDS HistoryNCBI Gene:339231Re-query CCDS DB by CCDS ID:45813.2Re-query CCDS DB by GeneID:339231See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45813.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622299.5 ENSP00000483183.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622299.5Link to Ensembl Protein Viewer:ENSP00000483183.1Re-query CCDS DB by Nucleotide ID:ENST00000622299Re-query CCDS DB by Protein ID:ENSP00000483183
Original member Current member NCBI NM_001040025.3 NP_001035114.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040025.3Link to Protein Sequence:NP_001035114.2Re-query CCDS DB by Nucleotide ID:NM_001040025Re-query CCDS DB by Protein ID:NP_001035114Link to BLAST:NP_001035114.2

Chromosomal Locations for CCDS 45813.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81681708 81681879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81682034 81682149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81683013 81683126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81683536 81683594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81683693 81683753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTGTCTCCTGCTGGGGGCCACGGGCGTCGGGAAGACGCTGCTGGTGAAACGGCTGCAGGAGGTGAGCT
CCCGGGATGGGAAAGGCGACCTGGGGGAGCCGCCCCCGACACGGCCCACGGTGGGCACCAATCTTACTGA
CATCGTGGCACAGAGAAAGATCACCATCCGGGAGCTTGGGGGGTGCATGGGCCCCATCTGGTCCAGTTAC
TATGGAAACTGCCGTTCTCTCCTGTTTGTGATGGACGCCTCTGACCCCACCCAGCTCTCTGCATCCTGTG
TGCAGCTCTTAGGTCTCCTTTCTGCAGAACAACTTGCAGAAGCATCGGTGCTGATACTCTTCAATAAAAT
CGACCTACCCTGTTACATGTCCACGGAGGAGATGAAGTCATTAATCAGGCTTCCAGACATCATTGCTTGT
GCCAAGCAGAACATCACCACGGCAGAAATCAGCGCCCGTGAAGGCACTGGCTTAGCAGGGGTGCTGGCCT
GGCTCCAGGCCACCCACAGAGCCAACGATTGA

Translation (173 aa):
MCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPPTRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSY
YGNCRSLLFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIAC
AKQNITTAEISAREGTGLAGVLAWLQATHRAND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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