NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4624.1 Public Homo sapiens 6 ZNF184 24 110 108 CCDS HistoryNCBI Gene:7738Re-query CCDS DB by CCDS ID:4624.1Re-query CCDS DB by GeneID:7738See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000211936.10 ENSP00000211936.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000211936.10Link to Ensembl Protein Viewer:ENSP00000211936.6Re-query CCDS DB by Nucleotide ID:ENST00000211936Re-query CCDS DB by Protein ID:ENSP00000211936
Original member Current member EBI ENST00000377419.1 ENSP00000366636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377419.1Link to Ensembl Protein Viewer:ENSP00000366636.1Re-query CCDS DB by Nucleotide ID:ENST00000377419Re-query CCDS DB by Protein ID:ENSP00000366636
Original member Current member EBI ENST00000683788.1 ENSP00000508298.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683788.1Link to Ensembl Protein Viewer:ENSP00000508298.1Re-query CCDS DB by Nucleotide ID:ENST00000683788Re-query CCDS DB by Protein ID:ENSP00000508298
Original member Current member NCBI NM_001318891.2 NP_001305820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318891.2Link to Protein Sequence:NP_001305820.1Re-query CCDS DB by Nucleotide ID:NM_001318891Re-query CCDS DB by Protein ID:NP_001305820Link to BLAST:NP_001305820.1
Original member Current member NCBI NM_001318892.2 NP_001305821.1 Accepted alive Link to Nucleotide Sequence:NM_001318892.2Link to Protein Sequence:NP_001305821.1Re-query CCDS DB by Nucleotide ID:NM_001318892Re-query CCDS DB by Protein ID:NP_001305821Link to BLAST:NP_001305821.1
Original member Current member NCBI NM_007149.3 NP_009080.2 Accepted alive Link to Nucleotide Sequence:NM_007149.3Link to Protein Sequence:NP_009080.2Re-query CCDS DB by Nucleotide ID:NM_007149Re-query CCDS DB by Protein ID:NP_009080Link to BLAST:NP_009080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305820.1 751 Q99676 751 100% 0 0
NP_001305821.1 751 Q99676 751 100% 0 0
NP_009080.2 751 Q99676 751 100% 0 0

Chromosomal Locations for CCDS 4624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27451303 27453260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27456826 27456921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27457283 27457409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27467853 27467920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27472288 27472294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGGAAGATCTGTCCTCTCCAGACTCCACCCTTCTCCAAGGGGGACATAATCTACTCTCATCAGCCAGTT
TTCAGGAAGCGGTGACTTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGACCC
TGGCCAGAGAGATTTGTTCAGGGATGTGACATTGGAAAATTATACACACCTGGTCTCTATAGGACTCCAA
GTTTCTAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCATGGATCATGGAGCCAAGCATTC
CAGTAGGTACCTGTGCAGACTGGGAGACAAGACTTGAAAATAGTGTGTCAGCCCCAGAGCCTGACATTTC
TGAAGAAGAGCTATCTCCAGAGGTAATAGTGGAAAAACACAAAAGAGATGATTCTTGGAGTTCCAACTTG
CTAGAAAGTTGGGAATATGAAGGCAGTTTAGAGAGACAGCAGGCAAACCAACAGACACTGCCAAAGGAAA
TAAAGGTAACCGAAAAGACAATACCCAGTTGGGAAAAAGGCCCTGTAAATAATGAATTTGGGAAAAGTGT
CAATGTGAGTTCAAACCTTGTAACACAAGAACCATCTCCAGAAGAGACCTCTACTAAAAGAAGCATCAAA
CAGAATTCAAACCCAGTTAAAAAAGAGAAATCTTGTAAGTGCAATGAATGTGGGAAAGCCTTTAGTTATT
GTTCAGCTCTTATTCGCCATCAGAGAACACATACTGGAGAAAAACCCTACAAATGTAATGAATGTGAAAA
AGCCTTCAGCCGGAGTGAAAACCTTATAAACCATCAAAGAATTCATACTGGAGATAAACCATATAAATGT
GATCAGTGTGGAAAAGGCTTCATTGAGGGTCCATCTCTTACTCAACATCAAAGAATTCATACTGGAGAAA
AACCATATAAATGTGATGAATGTGGGAAAGCCTTTAGTCAGAGGACCCATCTTGTTCAGCATCAGAGAAT
TCATACTGGCGAGAAGCCATACACTTGTAATGAGTGTGGAAAAGCCTTTAGCCAGAGAGGCCACTTTATG
GAACATCAGAAAATTCATACGGGAGAAAAACCTTTTAAATGTGATGAATGTGATAAAACCTTCACCAGGA
GCACACACCTTACTCAACATCAAAAAATTCATACTGGAGAAAAAACCTATAAATGTAATGAATGTGGAAA
GGCCTTCAACGGGCCCTCAACTTTTATCCGTCATCATATGATTCATACTGGTGAAAAACCGTACGAATGC
AATGAATGTGGGAAAGCCTTCAGCCAGCACTCAAACCTCACTCAGCATCAAAAAACTCATACTGGGGAGA
AACCCTATGATTGTGCAGAATGTGGAAAATCTTTTAGTTACTGGTCATCCCTTGCTCAACACCTGAAAAT
TCATACTGGAGAAAAACCTTACAAATGCAATGAATGTGGAAAGGCCTTCAGTTACTGCTCATCCCTTACT
CAACATCGGAGAATTCACACGAGAGAAAAGCCCTTTGAATGCAGTGAATGTGGAAAGGCTTTCAGTTATC
TCTCAAACCTTAATCAGCATCAGAAAACTCATACTCAAGAGAAAGCTTATGAATGTAAAGAATGTGGGAA
AGCTTTTATTCGGAGTTCATCTCTTGCTAAGCATGAAAGAATTCATACTGGAGAGAAACCCTATCAGTGT
CATGAATGTGGGAAAACCTTCAGTTATGGTTCATCCCTTATTCAGCATAGGAAGATCCATACTGGAGAAC
GACCTTACAAGTGTAATGAGTGTGGGAGAGCATTCAACCAGAACATACACCTTACACAGCATAAGAGAAT
TCATACAGGAGCCAAGCCTTATGAGTGTGCTGAGTGTGGTAAAGCCTTTCGACATTGTTCATCTCTTGCT
CAACATCAAAAAACTCACACAGAAGAAAAACCCTACCAGTGTAATAAATGTGAAAAGACCTTTAGCCAGA
GCTCCCATCTAACTCAGCATCAACGAATTCACACTGGGGAGAAGCCCTATAAGTGCAATGAATGTGACAA
AGCCTTTAGCCGGAGCACTCATCTGACTGAACATCAGAATACTCATACTGGAGAGAAACCTTATAACTGT
AATGAATGCAGAAAGACTTTTAGCCAGAGCACATATCTCATTCAGCACCAGAGAATTCATTCAGGAGAGA
AGCCTTTTGGATGTAATGATTGTGGAAAATCCTTCAGATATCGCTCTGCTCTCAACAAACATCAGAGACT
GCATCCTGGCATATGA

Translation (751 aa):
MEDLSSPDSTLLQGGHNLLSSASFQEAVTFKDVIVDFTQEEWKQLDPGQRDLFRDVTLENYTHLVSIGLQ
VSKPDVISQLEQGTEPWIMEPSIPVGTCADWETRLENSVSAPEPDISEEELSPEVIVEKHKRDDSWSSNL
LESWEYEGSLERQQANQQTLPKEIKVTEKTIPSWEKGPVNNEFGKSVNVSSNLVTQEPSPEETSTKRSIK
QNSNPVKKEKSCKCNECGKAFSYCSALIRHQRTHTGEKPYKCNECEKAFSRSENLINHQRIHTGDKPYKC
DQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFM
EHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYEC
NECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLT
QHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQC
HECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLA
QHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEKPYNC
NECRKTFSQSTYLIQHQRIHSGEKPFGCNDCGKSFRYRSALNKHQRLHPGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH