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Report for CCDS46483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46483.1 Public Homo sapiens 2 SPATS2L 24 110 108 CCDS HistoryNCBI Gene:26010Re-query CCDS DB by CCDS ID:46483.1Re-query CCDS DB by GeneID:26010See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358677.9 ENSP00000351503.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358677.9Link to Ensembl Protein Viewer:ENSP00000351503.4Re-query CCDS DB by Nucleotide ID:ENST00000358677Re-query CCDS DB by Protein ID:ENSP00000351503
Original member Current member EBI ENST00000409718.5 ENSP00000386336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409718.5Link to Ensembl Protein Viewer:ENSP00000386336.1Re-query CCDS DB by Nucleotide ID:ENST00000409718Re-query CCDS DB by Protein ID:ENSP00000386336
Original member Current member EBI ENST00000409140.8 ENSP00000386730.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409140.8Link to Ensembl Protein Viewer:ENSP00000386730.3Re-query CCDS DB by Nucleotide ID:ENST00000409140Re-query CCDS DB by Protein ID:ENSP00000386730
Original member Current member EBI ENST00000409988.7 ENSP00000386931.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409988.7Link to Ensembl Protein Viewer:ENSP00000386931.3Re-query CCDS DB by Nucleotide ID:ENST00000409988Re-query CCDS DB by Protein ID:ENSP00000386931
Original member Current member EBI ENST00000451764.6 ENSP00000391467.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451764.6Link to Ensembl Protein Viewer:ENSP00000391467.2Re-query CCDS DB by Nucleotide ID:ENST00000451764Re-query CCDS DB by Protein ID:ENSP00000391467
Original member Current member NCBI NM_001100422.1 NP_001093892.1 Accepted alive Link to Nucleotide Sequence:NM_001100422.1Link to Protein Sequence:NP_001093892.1Re-query CCDS DB by Nucleotide ID:NM_001100422Re-query CCDS DB by Protein ID:NP_001093892Link to BLAST:NP_001093892.1
Original member Current member NCBI NM_001100423.2 NP_001093893.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100423.2Link to Protein Sequence:NP_001093893.1Re-query CCDS DB by Nucleotide ID:NM_001100423Re-query CCDS DB by Protein ID:NP_001093893Link to BLAST:NP_001093893.1
Original member Current member NCBI NM_001282735.1 NP_001269664.1 Accepted alive Link to Nucleotide Sequence:NM_001282735.1Link to Protein Sequence:NP_001269664.1Re-query CCDS DB by Nucleotide ID:NM_001282735Re-query CCDS DB by Protein ID:NP_001269664Link to BLAST:NP_001269664.1
Original member Current member NCBI NM_015535.3 NP_056350.2 Accepted alive Link to Nucleotide Sequence:NM_015535.3Link to Protein Sequence:NP_056350.2Re-query CCDS DB by Nucleotide ID:NM_015535Re-query CCDS DB by Protein ID:NP_056350Link to BLAST:NP_056350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093892.1 558 Q9NUQ6-1 558 100% 0 0
NP_001093893.1 558 Q9NUQ6-1 558 100% 0 0
NP_001269664.1 558 Q9NUQ6-1 558 100% 0 0
NP_056350.2 558 Q9NUQ6-1 558 100% 0 0

Chromosomal Locations for CCDS 46483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200389245 200389283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200412311 200412419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200416379 200416428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200419250 200419496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200439122 200439328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200440649 200440784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200459769 200459827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200467290 200467399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200469914 200470016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200472832 200473052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200477636 200478031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCTGAACTCAATACTCATGTGAATGTCAAGGAAAAGATCTATGCAGTTAGATCAGTTGTTCCCAACA
AAAGCAATAATGAAATAGTCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTT
TGTGGATGGCAGTGCAATTCAAGTTCTAAAAGAATGGAATATGACAGGAAAAAAGAAGAACAATAAAAGA
AAAAGAAGCAAGTCCAAGCAGCATCAAGGCAACAAAGATGCTAAAGACAAGGTGGAGAGGCCTGAGGCAG
GGCCCCTGCAGCCGCAGCCACCACAGATTCAAAACGGCCCCATGAATGGCTGCGAGAAGGACAGCTCGTC
CACAGATTCTGCTAACGAAAAACCAGCCCTTATCCCTCGTGAGAAAAAGATCTCGATACTTGAGGAACCT
TCAAAGGCACTTCGTGGGGTCACAGAAGGCAACAGACTACTGCAACAGAAACTATCCTTAGATGGGAACC
CCAAACCTATACATGGAACAACAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGAGCAGCCTTGTAACCC
AAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATACCCCTGCAGCTCATCTTGAAATAAAGCCA
GATGAGTTGGCAAAGAAAAGAGGCCCAAATATTGAGAAATCAGTGAAGGATTTGCAACGCTGCACCGTTT
CTCTAACTAGATATCGCGTCATGATTAAGGAAGAAGTGGATAGTTCCGTGAAGAAGATCAAAGCTGCCTT
TGCTGAATTACACAACTGCATCATTGACAAAGAAGTTTCATTAATGGCAGAAATGGATAAAGTTAAAGAA
GAAGCCATGGAAATCCTGACTGCTCGTCAGAAGAAAGCAGAAGAACTAAAGAGACTCACTGACCTTGCCA
GTCAGATGGCAGAGATGCAGCTGGCCGAACTCAGGGCAGAAATTAAGCACTTTGTCAGCGAGCGTAAATA
TGACGAGGAGCTCGGGAAAGCTGCCCGGTTTTCCTGTGACATCGAACAGCTGAAGGCCCAAATCATGCTC
TGCGGAGAAATTACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGCTGCCTCTGC
TGAATGCGCACGCAGCAACCTCTGGGAAACAGAGTAACTTTTCCCGAAAATCATCCACTCACAATAAGCC
CTCTGAAGGCAAAGCGGCAAACCCCAAAATGGTGAGCAGTCTCCCCAGCACCGCCGACCCCTCTCACCAG
ACCATGCCGGCCAACAAGCAGAATGGATCTTCTAACCAAAGACGGAGATTTAATCCACAGTATCATAACA
ACAGGCTAAATGGGCCTGCCAAGTCGCAGGGCAGTGGGAATGAAGCCGAGCCACTGGGAAAGGGCAACAG
CCGCCACGAACACAGAAGACAGCCGCACAACGGCTTCCGGCCCAAAAACAAAGGCGGTGCCAAAAATCAA
GAGGCTTCCTTGGGGATGAAGACCCCCGAGGCCCCGGCCCATTCTGAAAAGCCCCGGCGAAGGCAGCACG
CTGCAGACACCTCGGAGGCCAGGCCCTTCCGGGGTAGTGTCGGTAGGGTTTCACAGTGCAATCTCTGCCC
CACGAGAATAGAAGTTTCCACAGATGCAGCAGTTCTCTCAGTCCCGGCTGTGACGTTGGTGGCCTGA

Translation (558 aa):
MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKR
KRSKSKQHQGNKDAKDKVERPEAGPLQPQPPQIQNGPMNGCEKDSSSTDSANEKPALIPREKKISILEEP
SKALRGVTEGNRLLQQKLSLDGNPKPIHGTTERSDGLQWSAEQPCNPSKPKAKTSPVKSNTPAAHLEIKP
DELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKE
EAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIML
CGEITHPKNNYSSRTPCSSLLPLLNAHAATSGKQSNFSRKSSTHNKPSEGKAANPKMVSSLPSTADPSHQ
TMPANKQNGSSNQRRRFNPQYHNNRLNGPAKSQGSGNEAEPLGKGNSRHEHRRQPHNGFRPKNKGGAKNQ
EASLGMKTPEAPAHSEKPRRRQHAADTSEARPFRGSVGRVSQCNLCPTRIEVSTDAAVLSVPAVTLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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