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Report for CCDS46542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46542.1 Public Homo sapiens 2 GIGYF2 24 110 108 CCDS HistoryNCBI Gene:26058Re-query CCDS DB by CCDS ID:46542.1Re-query CCDS DB by GeneID:26058See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409451.7 ENSP00000387170.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409451.7Link to Ensembl Protein Viewer:ENSP00000387170.3Re-query CCDS DB by Nucleotide ID:ENST00000409451Re-query CCDS DB by Protein ID:ENSP00000387170
Original member Current member NCBI NM_001103147.2 NP_001096617.1 Accepted alive Link to Nucleotide Sequence:NM_001103147.2Link to Protein Sequence:NP_001096617.1Re-query CCDS DB by Nucleotide ID:NM_001103147Re-query CCDS DB by Protein ID:NP_001096617Link to BLAST:NP_001096617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096617.1 1320 Q6Y7W6-3 1320 100% 0 0

Chromosomal Locations for CCDS 46542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232735198 232735238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232747615 232747744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232748987 232749082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232756223 232756334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232760480 232760591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232761396 232761436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232776412 232776477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232787150 232787329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232790698 232790915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232791008 232791170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232791261 232791446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232794748 232794944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232796062 232796221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232806491 232806657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232809720 232809811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232811244 232811351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232812391 232812491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232815637 232815737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232816871 232817032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232819827 232819985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232832857 232833093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232839849 232839971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232844046 232844255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232844369 232844574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232845732 232845886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232847348 232847571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232850262 232850409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232856793 232856860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGGCTCCGAGCTCTGTCCAGTGGTGGGAGTA
TTACATCCCCTCCTCTTTCTCCAGCATTGCCGAAGTATAAATTAGCAGATTATCGTTACGGCAGAGAAGA
AATGTTAGCACTTTTCCTTAAAGACAACAAGATACCTTCAGACCTTCTGGATAAAGAATTTCTGCCTATC
CTCCAGGAGGAACCCCTTCCACCATTGGCTCTGGTACCCTTTACAGAAGAAGAACAGAGAAACTTTTCCA
TGTCTGTAAATAGTGCTGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAACAGTGGTGGGGGCTCC
TAGAGGTCGAAGTTCTTCAAGAGGGCGAGGCAGAGGCAGAGGTGAATGTGGTTTCTACCAAAGAAGTTTT
GATGAAGTAGAGGGTGTTTTTGGTCGAGGAGGTGGCAGAGAAATGCATAGATCGCAGAGCTGGGAGGAAA
GGGGTGACAGACGTTTTGAAAAACCAGGACGAAAAGATGTAGGAAAGAAGAATGGATATTATTGCATGTA
CTCACCAGTTCTTTTGCTGGGTCAGCCTTTATGCCAAGGGAGACCAAATTTTGAGGAAGGTGGACCAACA
TCAGTAGGGAGAAAGCATGAATTTATACGCTCAGAAAGTGAAAATTGGCGCATCTTTAGAGAGGAACAAA
ATGGAGAAGATGAAGATGGAGGTTGGCGACTAGCTGGATCAAGGAGGGATGGAGAGAGGTGGCGACCTCA
CAGTCCTGATGGCCCTCGTTCTGCAGGCTGGCGGGAACACATGGAACGACGTCGGAGGTTTGAGTTTGAT
TTTCGAGATAGAGATGATGAACGGGGTTACCGAAGGGTTCGCTCTGGCAGTGGGAGCATAGATGATGACA
GGGATAGCTTGCCCGAATGGTGCTTAGAGGATGCTGAAGAAGAAATGGGTACATTTGACTCATCTGGAGC
ATTCCTTTCTCTAAAAAAAGTACAGAAAGAGCCTATTCCAGAAGAGCAGGAGATGGACTTCCGGCCTGTG
GACGAAGGGGAGGAGTGCTCTGACTCTGAGGGTAGCCATAATGAAGAGGCCAAAGAACCCGATAAGACAA
ATAAGAAAGAAGGAGAGAAAACAGATAGAGTAGGAGTTGCTAGTGAGGAAACTCCCCAGACCTCATCATC
ATCTGCTAGACCAGGTACTCCTTCAGACCATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA
CCAAAAACTGAGCAAACGGAAAAAGCTGAAGAGGAGACTCGGATGGAAAATAGTCTACCAGCCAAAGTGC
CCAGCAGAGGGGATGAAATGGTTGCTGATGTCCAGCAGCCCCTGTCGCAGATTCCTTCAGATACAGCCTC
TCCTCTTCTCATACTTCCACCTCCTGTTCCCAATCCTAGTCCTACTCTCCGGCCAGTTGAAACACCAGTT
GTAGGTGCTCCTGGTATGGGCAGTGTTTCCACAGAACCTGATGATGAAGAAGGTCTCAAACATTTGGAGC
AGCAAGCTGAGAAAATGGTGGCTTATCTCCAAGACAGTGCACTAGATGATGAAAGATTGGCATCAAAACT
GCAAGAGCACAGAGCTAAAGGAGTGTCGATTCCATTGATGCATGAAGCAATGCAGAAGTGGTATTACAAA
GATCCTCAGGGAGAAATTCAAGGTCCCTTCAATAATCAGGAGATGGCAGAATGGTTTCAGGCGGGCTATT
TTACTATGTCTTTATTGGTGAAGAGAGCGTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAAT
GTGGGGAAGGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGGAGAGCTGGACCAGGAACGA
CTGACCAGGCAGCAAGAACTCACAGCCTTATACCAGATGCAGCACCTGCAGTACCAGCAGTTTTTAATAC
AACAACAATATGCACAGGTTTTGGCCCAACAGCAGAAAGCAGCACTGTCTTCCCAGCAGCAGCAGCAGTT
GGCACTTCTTCTTCAACAGTTTCAGACCTTGAAGATGAGAATATCTGATCAGAACATCATTCCCTCAGTA
ACTAGGTCTGTGTCCGTGCCAGATACTGGCTCTATCTGGGAGCTTCAGCCAACAGCTTCACAGCCTACAG
TTTGGGAAGGTGGTAGTGTATGGGATCTTCCTCTGGACACCACGACACCAGGCCCTGCCCTGGAACAGCT
TCAGCAGCTAGAGAAGGCCAAAGCTGCAAAGCTAGAGCAAGAGAGAAGAGAGGCAGAAATGAGGGCAAAA
CGGGAAGAGGAAGAGCGAAAGAGGCAGGAAGAACTCCGAAGACAACAGGAGGAAATTCTTCGGCGACAGC
AGGAAGAAGAAAGGAAAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGAAGAGGCTCTGCGTCG
CCAGCGGGAGCAAGAAATTGCATTAAGGCGACAGCGAGAAGAGGAAGAAAGACAGCAGCAAGAAGAAGCT
CTTAGAAGACTGGAAGAGAGGAGAAGAGAAGAGGAAGAAAGGCGGAAGCAGGAAGAATTGTTACGCAAAC
AGGAAGAGGAGGCTGCAAAATGGGCCCGGGAAGAAGAAGAAGCCCAGCGTCGATTAGAGGAGAACCGGCT
GCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGAAGAACGGAAGAGAAAGGAGCTGGAGGTC
CAGCGGCAGAAGGAGTTAATGCGCCAGAGGCAGCAGCAGCAAGAGGCTCTCCGGAGGTTGCAGCAGCAGC
AGCAGCAACAACAGCTGGCGCAGATGAAGCTTCCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAAC
AGCATGTCAGTCCCAGGCCACGCTGTCGTTGGCTGAAATCCAAAAACTAGAGGAAGAACGAGAACGGCAG
CTTCGAGAAGAGCAAAGGCGCCAGCAGAGGGAGTTGATGAAAGCTCTTCAGCAGCAGCAGCAACAGCAAC
AGCAGAAACTCTCAGGTTGGGGGAATGTCAGCAAACCTTCAGGTACCACGAAATCTCTTCTGGAGATCCA
GCAGGAAGAGGCCAGGCAAATGCAAAAGCAGCAGCAGCAGCAGCAGCAACACCAGCAACCAAACAGAGCT
CGTAACAATACGCATTCCAACCTGCACACCAGCATTGGGAATTCTGTTTGGGGCTCTATAAATACTGGTC
CTCCTAACCAGTGGGCATCTGACCTAGTCAGTAGTATTTGGAGTAATGCTGACACTAAAAACTCCAACAT
GGGATTCTGGGATGATGCAGTGAAAGAGGTGGGACCTAGGAATTCAACAAATAAAAATAAAAACAACGCC
AGTCTCAGTAAATCTGTAGGTGTGTCTAACCGGCAGAATAAGAAAGTAGAAGAAGAAGAAAAGTTGCTGA
AGCTCTTTCAGGGAGTAAATAAAGCCCAAGATGGATTTACGCAGTGGTGTGAACAGATGCTTCATGCCCT
TAATACGGCAAATAACTTGGATGTTCCCACATTTGTTTCTTTCCTGAAAGAAGTAGAATCTCCTTATGAG
GTCCATGATTATATCAGGGCCTATTTAGGAGATACTTCTGAGGCCAAGGAGTTTGCCAAGCAGTTCCTTG
AGCGCCGTGCCAAACAGAAAGCCAACCAGCAGCGTCAGCAGCAGCAGCTGCCACAGCAGCAGCAGCAGCA
GCCGCCACAGCAGCCGCCACAGCAGCCACAACAGCAGGACTCTGTGTGGGGGATGAACCACAGTACACTC
CATTCAGTATTTCAGACCAATCAAAGCAACAACCAACAATCCAATTTTGAGGCTGTGCAGAGTGGCAAGA
AGAAGAAAAAGCAGAAGATGGTCCGAGCAGATCCCAGTTTATTAGGATTTTCAGTCAATGCATCATCGGA
GCGACTCAACATGGGTGAAATCGAGACGTTGGATGACTACTGA

Translation (1320 aa):
MAAETQTLNFGPEWLRALSSGGSITSPPLSPALPKYKLADYRYGREEMLALFLKDNKIPSDLLDKEFLPI
LQEEPLPPLALVPFTEEEQRNFSMSVNSAAVLRLTGRGGGGTVVGAPRGRSSSRGRGRGRGECGFYQRSF
DEVEGVFGRGGGREMHRSQSWEERGDRRFEKPGRKDVGKKNGYYCMYSPVLLLGQPLCQGRPNFEEGGPT
SVGRKHEFIRSESENWRIFREEQNGEDEDGGWRLAGSRRDGERWRPHSPDGPRSAGWREHMERRRRFEFD
FRDRDDERGYRRVRSGSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPV
DEGEECSDSEGSHNEEAKEPDKTNKKEGEKTDRVGVASEETPQTSSSSARPGTPSDHQSQEASQFERKDE
PKTEQTEKAEEETRMENSLPAKVPSRGDEMVADVQQPLSQIPSDTASPLLILPPPVPNPSPTLRPVETPV
VGAPGMGSVSTEPDDEEGLKHLEQQAEKMVAYLQDSALDDERLASKLQEHRAKGVSIPLMHEAMQKWYYK
DPQGEIQGPFNNQEMAEWFQAGYFTMSLLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQER
LTRQQELTALYQMQHLQYQQFLIQQQYAQVLAQQQKAALSSQQQQQLALLLQQFQTLKMRISDQNIIPSV
TRSVSVPDTGSIWELQPTASQPTVWEGGSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAK
REEEERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEEALRRQREQEIALRRQREEEERQQQEEA
LRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLRHEEEERKRKELEV
QRQKELMRQRQQQQEALRRLQQQQQQQQLAQMKLPSSSTWGQQSNTTACQSQATLSLAEIQKLEEERERQ
LREEQRRQQRELMKALQQQQQQQQQKLSGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQQHQQPNRA
RNNTHSNLHTSIGNSVWGSINTGPPNQWASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNSTNKNKNNA
SLSKSVGVSNRQNKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEVESPYE
VHDYIRAYLGDTSEAKEFAKQFLERRAKQKANQQRQQQQLPQQQQQQPPQQPPQQPQQQDSVWGMNHSTL
HSVFQTNQSNNQQSNFEAVQSGKKKKKQKMVRADPSLLGFSVNASSERLNMGEIETLDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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