NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46543.1 Public Homo sapiens 2 GIGYF2 24 110 108 CCDS HistoryNCBI Gene:26058Re-query CCDS DB by CCDS ID:46543.1Re-query CCDS DB by GeneID:26058See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409196.7 ENSP00000387070.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409196.7Link to Ensembl Protein Viewer:ENSP00000387070.3Re-query CCDS DB by Nucleotide ID:ENST00000409196Re-query CCDS DB by Protein ID:ENSP00000387070
Original member Current member NCBI NM_001103148.2 NP_001096618.1 Accepted alive Link to Nucleotide Sequence:NM_001103148.2Link to Protein Sequence:NP_001096618.1Re-query CCDS DB by Nucleotide ID:NM_001103148Re-query CCDS DB by Protein ID:NP_001096618Link to BLAST:NP_001096618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096618.1 1293 Q6Y7W6-5 1293 100% 0 0

Chromosomal Locations for CCDS 46543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232735198 232735238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232747615 232747744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232748987 232749082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232756223 232756334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232760480 232760591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232761396 232761436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232787150 232787329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232790716 232790915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232791008 232791170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232791258 232791446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232794748 232794944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232796062 232796221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232806491 232806657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232809720 232809811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232811244 232811351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232812391 232812491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232815637 232815737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232816871 232817032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232819827 232819985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232832857 232833093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232839849 232839971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232844046 232844255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232844369 232844574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232845732 232845886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232847348 232847571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232850262 232850409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232856793 232856860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3882 nt):
ATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGGCTCCGAGCTCTGTCCAGTGGTGGGAGTA
TTACATCCCCTCCTCTTTCTCCAGCATTGCCGAAGTATAAATTAGCAGATTATCGTTACGGCAGAGAAGA
AATGTTAGCACTTTTCCTTAAAGACAACAAGATACCTTCAGACCTTCTGGATAAAGAATTTCTGCCTATC
CTCCAGGAGGAACCCCTTCCACCATTGGCTCTGGTACCCTTTACAGAAGAAGAACAGAGAAACTTTTCCA
TGTCTGTAAATAGTGCTGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAACAGTGGTGGGGGCTCC
TAGAGGTCGAAGTTCTTCAAGAGGGCGAGGCAGAGGCAGAGGTGAATGTGGTTTCTACCAAAGAAGTTTT
GATGAAGTAGAGGGTGTTTTTGGTCGAGGAGGTGGCAGAGAAATGCATAGATCGCAGAGCTGGGAGGAAA
GGGGTGACAGACGTTTTGAAAAACCAGGACGAAAAGATGTAGGGAGACCAAATTTTGAGGAAGGTGGACC
AACATCAGTAGGGAGAAAGCATGAATTTATACGCTCAGAAAGTGAAAATTGGCGCATCTTTAGAGAGGAA
CAAAATGGAGAAGATGAAGATGGAGGTTGGCGACTAGCTGGATCAAGGAGGGATGGAGAGAGGTGGCGAC
CTCACAGTCCTGGCTGGCGGGAACACATGGAACGACGTCGGAGGTTTGAGTTTGATTTTCGAGATAGAGA
TGATGAACGGGGTTACCGAAGGGTTCGCTCTGGCAGTGGGAGCATAGATGATGACAGGGATAGCTTGCCC
GAATGGTGCTTAGAGGATGCTGAAGAAGAAATGGGTACATTTGACTCATCTGGAGCATTCCTTTCTCTAA
AAAAAGTACAGAAAGAGCCTATTCCAGAAGAGCAGGAGATGGACTTCCGGCCTGTGGACGAAGGGGAGGA
GTGCTCTGACTCTGAGGGTAGCCATAATGAAGAGGCCAAAGAACCCGATAAGACAAATAAGAAAGAAGGA
GAGAAAACAGATAGAGTAGGAGTTGAAGCTAGTGAGGAAACTCCCCAGACCTCATCATCATCTGCTAGAC
CAGGTACTCCTTCAGACCATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAACCAAAAACTGA
GCAAACGGAAAAAGCTGAAGAGGAGACTCGGATGGAAAATAGTCTACCAGCCAAAGTGCCCAGCAGAGGG
GATGAAATGGTTGCTGATGTCCAGCAGCCCCTGTCGCAGATTCCTTCAGATACAGCCTCTCCTCTTCTCA
TACTTCCACCTCCTGTTCCCAATCCTAGTCCTACTCTCCGGCCAGTTGAAACACCAGTTGTAGGTGCTCC
TGGTATGGGCAGTGTTTCCACAGAACCTGATGATGAAGAAGGTCTCAAACATTTGGAGCAGCAAGCTGAG
AAAATGGTGGCTTATCTCCAAGACAGTGCACTAGATGATGAAAGATTGGCATCAAAACTGCAAGAGCACA
GAGCTAAAGGAGTGTCGATTCCATTGATGCATGAAGCAATGCAGAAGTGGTATTACAAAGATCCTCAGGG
AGAAATTCAAGGTCCCTTCAATAATCAGGAGATGGCAGAATGGTTTCAGGCGGGCTATTTTACTATGTCT
TTATTGGTGAAGAGAGCGTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAATGTGGGGAAGGG
TTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGGAGAGCTGGACCAGGAACGACTGACCAGGCA
GCAAGAACTCACAGCCTTATACCAGATGCAGCACCTGCAGTACCAGCAGTTTTTAATACAACAACAATAT
GCACAGGTTTTGGCCCAACAGCAGAAAGCAGCACTGTCTTCCCAGCAGCAGCAGCAGTTGGCACTTCTTC
TTCAACAGTTTCAGACCTTGAAGATGAGAATATCTGATCAGAACATCATTCCCTCAGTAACTAGGTCTGT
GTCCGTGCCAGATACTGGCTCTATCTGGGAGCTTCAGCCAACAGCTTCACAGCCTACAGTTTGGGAAGGT
GGTAGTGTATGGGATCTTCCTCTGGACACCACGACACCAGGCCCTGCCCTGGAACAGCTTCAGCAGCTAG
AGAAGGCCAAAGCTGCAAAGCTAGAGCAAGAGAGAAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGA
AGAGCGAAAGAGGCAGGAAGAACTCCGAAGACAACAGGAGGAAATTCTTCGGCGACAGCAGGAAGAAGAA
AGGAAAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGAAGAGGCTCTGCGTCGCCAGCGGGAGC
AAGAAATTGCATTAAGGCGACAGCGAGAAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTTAGAAGACT
GGAAGAGAGGAGAAGAGAAGAGGAAGAAAGGCGGAAGCAGGAAGAATTGTTACGCAAACAGGAAGAGGAG
GCTGCAAAATGGGCCCGGGAAGAAGAAGAAGCCCAGCGTCGATTAGAGGAGAACCGGCTGCGGATGGAAG
AGGAGGCAGCCAGACTCCGGCATGAGGAAGAAGAACGGAAGAGAAAGGAGCTGGAGGTCCAGCGGCAGAA
GGAGTTAATGCGCCAGAGGCAGCAGCAGCAAGAGGCTCTCCGGAGGTTGCAGCAGCAGCAGCAGCAACAA
CAGCTGGCGCAGATGAAGCTTCCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGTCAGT
CCCAGGCCACGCTGTCGTTGGCTGAAATCCAAAAACTAGAGGAAGAACGAGAACGGCAGCTTCGAGAAGA
GCAAAGGCGCCAGCAGAGGGAGTTGATGAAAGCTCTTCAGCAGCAGCAGCAACAGCAACAGCAGAAACTC
TCAGGTTGGGGGAATGTCAGCAAACCTTCAGGTACCACGAAATCTCTTCTGGAGATCCAGCAGGAAGAGG
CCAGGCAAATGCAAAAGCAGCAGCAGCAGCAGCAGCAACACCAGCAACCAAACAGAGCTCGTAACAATAC
GCATTCCAACCTGCACACCAGCATTGGGAATTCTGTTTGGGGCTCTATAAATACTGGTCCTCCTAACCAG
TGGGCATCTGACCTAGTCAGTAGTATTTGGAGTAATGCTGACACTAAAAACTCCAACATGGGATTCTGGG
ATGATGCAGTGAAAGAGGTGGGACCTAGGAATTCAACAAATAAAAATAAAAACAACGCCAGTCTCAGTAA
ATCTGTAGGTGTGTCTAACCGGCAGAATAAGAAAGTAGAAGAAGAAGAAAAGTTGCTGAAGCTCTTTCAG
GGAGTAAATAAAGCCCAAGATGGATTTACGCAGTGGTGTGAACAGATGCTTCATGCCCTTAATACGGCAA
ATAACTTGGATGTTCCCACATTTGTTTCTTTCCTGAAAGAAGTAGAATCTCCTTATGAGGTCCATGATTA
TATCAGGGCCTATTTAGGAGATACTTCTGAGGCCAAGGAGTTTGCCAAGCAGTTCCTTGAGCGCCGTGCC
AAACAGAAAGCCAACCAGCAGCGTCAGCAGCAGCAGCTGCCACAGCAGCAGCAGCAGCAGCCGCCACAGC
AGCCGCCACAGCAGCCACAACAGCAGGACTCTGTGTGGGGGATGAACCACAGTACACTCCATTCAGTATT
TCAGACCAATCAAAGCAACAACCAACAATCCAATTTTGAGGCTGTGCAGAGTGGCAAGAAGAAGAAAAAG
CAGAAGATGGTCCGAGCAGATCCCAGTTTATTAGGATTTTCAGTCAATGCATCATCGGAGCGACTCAACA
TGGGTGAAATCGAGACGTTGGATGACTACTGA

Translation (1293 aa):
MAAETQTLNFGPEWLRALSSGGSITSPPLSPALPKYKLADYRYGREEMLALFLKDNKIPSDLLDKEFLPI
LQEEPLPPLALVPFTEEEQRNFSMSVNSAAVLRLTGRGGGGTVVGAPRGRSSSRGRGRGRGECGFYQRSF
DEVEGVFGRGGGREMHRSQSWEERGDRRFEKPGRKDVGRPNFEEGGPTSVGRKHEFIRSESENWRIFREE
QNGEDEDGGWRLAGSRRDGERWRPHSPGWREHMERRRRFEFDFRDRDDERGYRRVRSGSGSIDDDRDSLP
EWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVDEGEECSDSEGSHNEEAKEPDKTNKKEG
EKTDRVGVEASEETPQTSSSSARPGTPSDHQSQEASQFERKDEPKTEQTEKAEEETRMENSLPAKVPSRG
DEMVADVQQPLSQIPSDTASPLLILPPPVPNPSPTLRPVETPVVGAPGMGSVSTEPDDEEGLKHLEQQAE
KMVAYLQDSALDDERLASKLQEHRAKGVSIPLMHEAMQKWYYKDPQGEIQGPFNNQEMAEWFQAGYFTMS
LLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELTALYQMQHLQYQQFLIQQQY
AQVLAQQQKAALSSQQQQQLALLLQQFQTLKMRISDQNIIPSVTRSVSVPDTGSIWELQPTASQPTVWEG
GSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEEE
RKRREEEELARRKQEEALRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEE
AAKWAREEEEAQRRLEENRLRMEEEAARLRHEEEERKRKELEVQRQKELMRQRQQQQEALRRLQQQQQQQ
QLAQMKLPSSSTWGQQSNTTACQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQKL
SGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQQHQQPNRARNNTHSNLHTSIGNSVWGSINTGPPNQ
WASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNSTNKNKNNASLSKSVGVSNRQNKKVEEEEKLLKLFQ
GVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEVESPYEVHDYIRAYLGDTSEAKEFAKQFLERRA
KQKANQQRQQQQLPQQQQQQPPQQPPQQPQQQDSVWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKK
QKMVRADPSLLGFSVNASSERLNMGEIETLDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH