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Report for CCDS46544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46544.1 Public Homo sapiens 2 NGEF 24 110 108 CCDS HistoryNCBI Gene:25791Re-query CCDS DB by CCDS ID:46544.1Re-query CCDS DB by GeneID:25791See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373552.8 ENSP00000362653.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373552.8Link to Ensembl Protein Viewer:ENSP00000362653.4Re-query CCDS DB by Nucleotide ID:ENST00000373552Re-query CCDS DB by Protein ID:ENSP00000362653
Original member Current member NCBI NM_001114090.2 NP_001107562.1 Accepted alive Link to Nucleotide Sequence:NM_001114090.2Link to Protein Sequence:NP_001107562.1Re-query CCDS DB by Nucleotide ID:NM_001114090Re-query CCDS DB by Protein ID:NP_001107562Link to BLAST:NP_001107562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107562.1 618 Q8N5V2-3 618 100% 0 0

Chromosomal Locations for CCDS 46544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232879489 232879679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232881146 232881250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232882186 232882265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232883311 232883466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232883981 232884144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232885280 232885369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232888033 232888107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232891358 232891487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232892898 232893050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232894756 232894916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232920284 232920585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232927044 232927186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232927893 232927999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGAGCTGCTGGCCGCTGCCTTCAGCGCCGCCTGCGCCGTGGACCACGACAGTTCCACCTCGGAAAGCG
ACGCGCGCGACTCGGCGGCGGGACACCTGCCCGGCAGTGAGTCGTCCTCCACCCCGGGAAATGGGGCCAC
GCCCGAGGAGTGGCCGGCCCTGGCCGACAGCCCCACCACGCTCACCGAGGCCCTGCGGATGATCCACCCC
ATTCCCGCCGACTCCTGGAGAAACCTCATTGAACAAATAGGGCTCCTGTATCAGGAATACCGAGATAAAT
CGACTCTCCAAGAAATCGAAACCAGGAGGCAACAGGATGCAGAAATAGAAGACAATACCAATGGGTCCCC
GGCCAGTGAGGACACCCCGGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGCCGGCCAGCCCACCAGAG
AGGAAGACTCTGCCCCAGATCTGCCTGCTCAGTAACCCCCACTCAAGGTTCAACCTCTGGCAGGATCTTC
CCGAGATCCGGAGCAGCGGGGTGCTTGAGATCCTACAGCCCGAGGAGATTAAGCTGCAGGAGGCCATGTT
CGAGCTGGTCACTTCCGAGGCGTCCTACTACAAGAGTCTGAACCTGCTCGTGTCCCACTTCATGGAGAAC
GAGCGGATAAGGAAGATCCTGCACCCGTCCGAGGCGCACATCCTCTTCTCCAACGTCCTGGACGTGCTGG
CTGTCAGTGAGCGGTTCCTCCTGGAGCTGGAGCACCGGATGGAGGAGAACATCGTCATCTCTGACGTGTG
TGACATTGTGTACCGTTATGCGGCCGACCACTTCTCTGTCTACATCACCTACGTCAGCAATCAGACCTAC
CAGGAGCGGACCTATAAGCAGCTGCTCCAGGAGAAGGCAGCTTTCCGGGAGCTGATCGCGCAGCTAGAGC
TCGACCCCAAGTGCAGGGGGCTGCCCTTCTCCTCCTTCCTCATCCTGCCTTTCCAGAGGATCACACGCCT
CAAGCTGTTGGTCCAGAACATCCTGAAGAGGGTAGAAGAGAGGTCTGAGCGGGAGTGCACTGCTTTGGAT
GCTCACAAGGAGCTGGAAATGGTGGTGAAGGCATGCAACGAGGGCGTCAGGAAAATGAGCCGCACGGAAC
AGATGATCAGCATTCAGAAGAAGATGGAGTTCAAGATCAAGTCGGTGCCCATCATCTCCCACTCCCGCTG
GCTGCTGAAGCAGGGTGAGCTGCAGCAGATGTCAGGCCCCAAGACCTCCCGGACCCTGAGGACCAAGAAG
CTCTTCCACGAAATTTACCTCTTCCTGTTCAACGACCTGCTGGTGATCTGCCGGCAGATTCCAGGAGACA
AGTACCAGGTATTTGACTCAGCTCCGCGGGGACTGCTGCGTGTGGAGGAGCTGGAGGACCAGGGCCAGAC
GCTGGCCAACGTGTTCATCCTGCGGCTGCTGGAGAACGCAGATGACCGGGAGGCCACCTACATGCTAAAG
GCGTCCTCTCAGAGTGAGATGAAGCGTTGGATGACCTCACTGGCCCCCAACAGGAGGACCAAGTTTGTTT
CGTTCACATCCCGGCTGCTGGACTGCCCCCAGGTCCAGTGCGTGCACCCATACGTGGCTCAGCAGCCAGA
CGAGCTGACGCTGGAGCTCGCCGACATCCTCAACATCCTGGACAAGACTGACGACGGGTGGATCTTTGGC
GAGCGTCTGCACGACCAGGAGAGAGGCTGGTTCCCCAGCTCCATGACTGAGGAGATCTTGAATCCCAAGA
TCCGGTCCCAGAACCTCAAGGAATGTTTCCGTGTCCACAAGATGGATGACCCTCAGCGCAGCCAGAACAA
GGACCGCAGGAAGCTGGGCAGCCGGAATCGGCAATGA

Translation (618 aa):
MELLAAAFSAACAVDHDSSTSESDARDSAAGHLPGSESSSTPGNGATPEEWPALADSPTTLTEALRMIHP
IPADSWRNLIEQIGLLYQEYRDKSTLQEIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPE
RKTLPQICLLSNPHSRFNLWQDLPEIRSSGVLEILQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFMEN
ERIRKILHPSEAHILFSNVLDVLAVSERFLLELEHRMEENIVISDVCDIVYRYAADHFSVYITYVSNQTY
QERTYKQLLQEKAAFRELIAQLELDPKCRGLPFSSFLILPFQRITRLKLLVQNILKRVEERSERECTALD
AHKELEMVVKACNEGVRKMSRTEQMISIQKKMEFKIKSVPIISHSRWLLKQGELQQMSGPKTSRTLRTKK
LFHEIYLFLFNDLLVICRQIPGDKYQVFDSAPRGLLRVEELEDQGQTLANVFILRLLENADDREATYMLK
ASSQSEMKRWMTSLAPNRRTKFVSFTSRLLDCPQVQCVHPYVAQQPDELTLELADILNILDKTDDGWIFG
ERLHDQERGWFPSSMTEEILNPKIRSQNLKECFRVHKMDDPQRSQNKDRRKLGSRNRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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