NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46787.1 Public Homo sapiens 3 SUSD5 24 110 108 CCDS HistoryNCBI Gene:26032Re-query CCDS DB by CCDS ID:46787.1Re-query CCDS DB by GeneID:26032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309558.8 ENSP00000308727.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309558.8Link to Ensembl Protein Viewer:ENSP00000308727.3Re-query CCDS DB by Nucleotide ID:ENST00000309558Re-query CCDS DB by Protein ID:ENSP00000308727
Original member Current member NCBI NM_015551.2 NP_056366.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015551.2Link to Protein Sequence:NP_056366.1Re-query CCDS DB by Nucleotide ID:NM_015551Re-query CCDS DB by Protein ID:NP_056366Link to BLAST:NP_056366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056366.1 629 O60279 629 100% 0 0

Chromosomal Locations for CCDS 46787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 33152742 33154033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33174886 33175074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33207808 33207926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33213928 33214105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33218686 33218797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGACTGCCGAGGGACCCAGCCCGCCTGCCCGTTGGCACAGACGCCTCCCCGGGCTCTGGGCGGCGGCGC
TGCTCCTGCTCGGTCTGCCGCGCCTTTCGGTGCGGGCGGATGGAAAGTTCTTTGTGCTGGAGTCTCAGAA
TGGCTCTCAGGGCCTACAACTGGAGGCTGCTCGGCTTTCCTGCAAGAGCAGGGGCGCTCACCTGGCATCT
GCAGACGAGCTGCGGAGAGTGGTACAGGATTGCTCCTTTGCGGTGTGCACCACTGGCTGGCTAGCAGATG
GTACTCTTGGAACAACTGTGTGTAGCAAAGGAAGTGGAGAACAGCAAATCATGAGAGCTGTCGATGTGAG
AATTGAGAGCAACCCAGTTCCTGGTGGCACATACAGTGCCCTTTGTATTAAGGATGAAGAGAAGCCGTGT
GGAGACCCGCCTTCGTTCCCACACACCATCCTGCAGGGCCGCACCGGCTTGGAAATGGGGGATGAACTGC
TGTACGTGTGTGCCCCAGGCCACATCATGGGCCACCGGGAGACCGCCTTCACCTTGCTATGTAACAGCTG
TGGGGAGTGGTACGGCCTGGTGCAGGCCTGTGGGAAAGATGAGGCTGAGGCACACATTGACTATGAAGAT
AACTTCCCTGATGACAGATCTGTGTCATTCAGAGAGCTCATGGAGGATTCCCGGACAGAGGCAGATGAGG
ACAGGGGTCAGGGAGACTCCTCTGAGGAGGCTCCAAAACAGGACCGTCTGGTCTCCATTTCTGTGGGGAG
AGAAAACATAGCCCGGGATAAAGTCTTTGTGCCAACCACAGGCTTGCCTGGTGCTGGGAGCAGTGTCCCC
GCAGATTCACCAGGATCACGGCTGCTCCAGAAGCACTTGTTCTGGTTTCCTGCTGAGGCTTTCCACAAGC
CTGGGTTGGAAAAGGAGGTGGATGATGACACCAAAAAGCAGTTTTCTGCTGGAGACAACCACAGTGGTGT
AAAATTGGTCCCAGGTGAACCTGAAACCAAGGTGATCTACGGCAACACTGATGGTCCCTCGGGGCCATTT
GTGGGCAAGAATGACAGCAAGGCAGGAGATCCAGTGGTGAGCAGCAGTGATGAGTCCTGGTTAGATGGCT
ACCCTGTGACAGAGGGGGCTTGGAGGAAGACAGAGGCAGAAGAGGAAGAAGATGGGGACAGAGGGGATGG
GTCAGTAGGGCTGGATGAAAACGTCCTAGTTACTCCTGATCAGCCCATTCTTGTGGAAGTTAAGAAGCCC
AAGAGTAGCACCCTCACACCAAGCGAGGGCATGACCCATAGTTCAGTTCTTCCATCTCAAATGCTAGATG
TGGAAGCTTTGGCGCTCAGACCCGTGAATGCTTCCGAGACTGAGGGCATTGGGGATGGTGACTTGACGAA
GTACCAGTCAACTCTACCCTGGAGATTCATCACAGAGGAATCTCCCATGGCCACCCTGTCCTATGAGCTC
ACCAGCTCCACCCTGGAGATATTAACAGTGAACACTGTCAAGCAGACACCTAACCACATCCCCTCAACGA
TCATGGCAACCACCCAGCCTCCAGTAGAAACCACTGTTCCTGAGATCCAGGATAGCTTCCCATACCTGCT
GTCTGAAGACTTCTTTGGACAGGAAGGCCCCGGGCCAGGTGCAAGTGAGGAGCTTCATCCCACCTTGGAG
TCGTGTGTGGGGGACGGATGTCCTGGCCTCAGCAGAGGCCCTGTGATCGCCACCATTGTCACCGTCCTGT
GCCTACTGCTGCTCCTGGCAGGTGTGGGGATGGTGTGGGGCTACCGCAAGTGCCAGCACAAGAGCTCTGT
GTACAAGCTGAATGTTGGCCAGCGGCAGGCTCGGCACTACCACCAGCAGATCGAGATGGAGAAGGTCTAG

Translation (629 aa):
MTAEGPSPPARWHRRLPGLWAAALLLLGLPRLSVRADGKFFVLESQNGSQGLQLEAARLSCKSRGAHLAS
ADELRRVVQDCSFAVCTTGWLADGTLGTTVCSKGSGEQQIMRAVDVRIESNPVPGGTYSALCIKDEEKPC
GDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYED
NFPDDRSVSFRELMEDSRTEADEDRGQGDSSEEAPKQDRLVSISVGRENIARDKVFVPTTGLPGAGSSVP
ADSPGSRLLQKHLFWFPAEAFHKPGLEKEVDDDTKKQFSAGDNHSGVKLVPGEPETKVIYGNTDGPSGPF
VGKNDSKAGDPVVSSSDESWLDGYPVTEGAWRKTEAEEEEDGDRGDGSVGLDENVLVTPDQPILVEVKKP
KSSTLTPSEGMTHSSVLPSQMLDVEALALRPVNASETEGIGDGDLTKYQSTLPWRFITEESPMATLSYEL
TSSTLEILTVNTVKQTPNHIPSTIMATTQPPVETTVPEIQDSFPYLLSEDFFGQEGPGPGASEELHPTLE
SCVGDGCPGLSRGPVIATIVTVLCLLLLLAGVGMVWGYRKCQHKSSVYKLNVGQRQARHYHQQIEMEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH