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Report for CCDS46928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46928.1 Public Homo sapiens 3 U2SURP 24 110 108 CCDS HistoryNCBI Gene:23350Re-query CCDS DB by CCDS ID:46928.1Re-query CCDS DB by GeneID:23350See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46928.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000473835.7 ENSP00000418563.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000473835.7Link to Ensembl Protein Viewer:ENSP00000418563.1Re-query CCDS DB by Nucleotide ID:ENST00000473835Re-query CCDS DB by Protein ID:ENSP00000418563
Original member Current member NCBI NM_001080415.2 NP_001073884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080415.2Link to Protein Sequence:NP_001073884.1Re-query CCDS DB by Nucleotide ID:NM_001080415Re-query CCDS DB by Protein ID:NP_001073884Link to BLAST:NP_001073884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073884.1 1029 O15042-1 1029 100% 0 0

Chromosomal Locations for CCDS 46928.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 143001629 143001673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143010815 143010859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143012222 143012353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143014311 143014409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143016257 143016371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143016842 143016975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143019969 143020036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143020599 143020693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143021350 143021385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143021473 143021555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143022497 143022662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143022853 143023064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143023975 143024018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143027149 143027253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143028340 143028406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143028483 143028646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143032784 143032946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143033271 143033350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143034888 143034975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143035982 143036104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143037179 143037335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143038108 143038203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143038894 143038960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143043117 143043276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143050939 143051049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143053676 143053794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143054943 143055119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143056312 143056450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3090 nt):
ATGGCGGACAAAACGCCAGGCGGATCTCAGAAGGCCAGTTCAAAGACGAGATCATCAGATGTTCATTCAT
CTGGATCTTCAGATGCACATATGGATGCATCTGGACCCTCAGATAGTGATATGCCAAGTCGGACACGACC
TAAGAGCCCAAGAAAACATAATTATAGGAATGAAAGTGCCCGTGAAAGCCTTTGTGATTCTCCTCATCAG
AATCTCTCAAGACCTCTTCTGGAAAACAAACTTAAAGCATTCAGTATTGGAAAAATGAGTACAGCTAAGC
GAACTTTAAGTAAAAAGGAACAGGAAGAATTAAAGAAAAAGGAGGATGAAAAGGCAGCTGCTGAGATTTA
TGAGGAGTTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAAGTGAAAACATTTGTGCGAGGGGGTGTT
GTTAATGCAGCTAAAGAAGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAGCCATCTTCAAGAT
TTGCAGATCAAAAAAATCCTCCAAATCAGTCTTCCAATGAAAGACCACCATCTCTTCTTGTGATAGAAAC
CAAAAAACCTCCACTTAAAAAAGGAGAGAAAGAAAAGAAAAAAAGCAATTTGGAACTCTTCAAAGAAGAA
TTAAAGCAAATTCAAGAGGAACGTGATGAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACCTC
CTCAGTCAGATTCTGATGGTCAGCGTCGTTCTATGGACGCGCCTTCAAGAAGAAATAGATCATCTGGTGT
TCTTGATGATTACGCACCTGGCTCACATGATGTAGGAGATCCAAGCACTACTAATTTATACCTTGGAAAC
ATTAATCCACAGATGAATGAAGAAATGCTGTGCCAAGAATTTGGAAGATTTGGACCGTTAGCCAGTGTGA
AAATCATGTGGCCTAGAACTGATGAAGAAAGAGCCAGAGAGAGAAATTGCGGCTTTGTGGCCTTTATGAA
TAGAAGAGATGCTGAAAGAGCTTTAAAAAATTTGAATGGAAAAATGATTATGTCTTTTGAAATGAAGTTA
GGTTGGGGTAAAGCTGTACCTATTCCTCCACATCCAATATACATTCCGCCTTCTATGATGGAACATACGC
TTCCCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGGTTAAAAAACCCTAATGCTCC
TATGTTACCGCCACCTAAAAACAAAGAGGATTTTGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTT
ATCCCAACAGAAAGGAATTTGCTCGCCCTGATACATCGAATGATAGAGTTTGTTGTACGTGAAGGGCCAA
TGTTTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGTTCAGGTTCTTATTTGAAAACCAGAC
ACCAGCCCATGTTTACTATAGGTGGAAGCTTTATTCTATTCTGCAGGGAGATTCTCCAACTAAATGGCGG
ACGGAAGATTTTCGTATGTTCAAAAATGGATCTTTTTGGAGGCCACCACCATTAAATCCGTACTTGCATG
GAATGTCAGAAGAGCAAGAAACAGAAGCTTTTGTAGAGGAACCTAGTAAAAAGGGAGCACTTAAGGAAGA
ACAGAGGGATAAATTGGAAGAAATCTTGCGGGGATTAACTCCAAGGAAAAATGATATTGGAGATGCAATG
GTTTTCTGTCTTAATAATGCTGAAGCTGCTGAAGAAATAGTGGATTGCATTACTGAGTCGTTGTCCATCT
TAAAGACACCCCTTCCTAAAAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTGTACAACTCTTCAGC
CAAAGTTGCTAATGCTTCATATTATAGAAAATTTTTTGAAACAAAGTTATGTCAGATATTTTCAGACCTC
AATGCCACCTATCGTACAATTCAAGGCCATTTACAATCTGAAAACTTTAAGCAACGGGTAATGACTTGCT
TCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTACAAAATATTTTCTTAGG
ACTTGTAAATATTATTGAAGAAAAGGAAACAGAGGATGTTCCAGATGACCTTGATGGTGCCCCCATCGAG
GAAGAGCTTGATGGTGCACCTCTGGAAGATGTAGATGGAATTCCTATTGATGCTACTCCCATCGATGATC
TTGATGGAGTCCCTATAAAAAGTCTTGATGATGATCTTGATGGAGTGCCTTTGGATGCAACTGAAGACTC
AAAAAAGAATGAGCCTATATTTAAAGTTGCCCCATCAAAATGGGAAGCTGTGGATGAATCTGAATTGGAA
GCACAGGCTGTTACAACTTCTAAATGGGAATTATTTGACCAGCATGAAGAATCAGAAGAAGAAGAAAATC
AAAATCAAGAAGAAGAAAGTGAAGATGAAGAAGATACTCAAAGTTCCAAATCTGAAGAACATCATTTGTA
CTCTAATCCAATCAAAGAAGAAATGACTGAGTCTAAGTTCTCTAAGTACTCTGAAATGAGTGAGGAAAAA
CGAGCCAAACTTCGTGAAATTGAGCTCAAAGTTATGAAGTTTCAGGATGAATTGGAATCTGGGAAAAGAC
CTAAAAAACCAGGCCAGAGTTTTCAGGAGCAAGTAGAACACTACAGAGATAAACTTCTTCAACGAGAGAA
AGAGAAAGAGTTAGAAAGAGAACGAGAAAGAGACAAGAAAGATAAAGAAAAATTGGAATCTCGCTCCAAA
GACAAGAAGGAAAAAGATGAGTGTACTCCGACAAGGAAGGAAAGGAAGAGGCGACACAGTACATCCCCCA
GCCCATCTCGCAGTAGCAGTGGTAGACGAGTGAAATCCCCATCACCAAAATCGGAGCGATCAGAGCGTTC
AGAAAGATCTCATAAAGAGAGCTCACGGTCCAGGTCATCTCACAAAGATTCTCCTAGAGATGTTAGCAAA
AAAGCCAAAAGATCACCATCTGGTTCAAGGACACCTAAAAGGTCTAGGCGATCACGGTCTAGATCTCCTA
AAAAATCAGGAAAGAAGTCCAGATCCCAGTCCAGATCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAA
CAAACACTGA

Translation (1029 aa):
MADKTPGGSQKASSKTRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESARESLCDSPHQ
NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGV
VNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEE
LKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGN
INPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKL
GWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVV
IPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWR
TEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAM
VFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDL
NATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIE
EELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELE
AQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEK
RAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSK
DKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK
KAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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