NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46971.1 Public Homo sapiens 3 VPS8 24 110 108 CCDS HistoryNCBI Gene:23355Re-query CCDS DB by CCDS ID:46971.1Re-query CCDS DB by GeneID:23355See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000625842.3 ENSP00000487164.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000625842.3Link to Ensembl Protein Viewer:ENSP00000487164.1Re-query CCDS DB by Nucleotide ID:ENST00000625842Re-query CCDS DB by Protein ID:ENSP00000487164
Original member Current member NCBI NM_001009921.3 NP_001009921.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009921.3Link to Protein Sequence:NP_001009921.1Re-query CCDS DB by Nucleotide ID:NM_001009921Re-query CCDS DB by Protein ID:NP_001009921Link to BLAST:NP_001009921.1
Original member Current member NCBI NM_001349292.2 NP_001336221.1 Accepted alive Link to Nucleotide Sequence:NM_001349292.2Link to Protein Sequence:NP_001336221.1Re-query CCDS DB by Nucleotide ID:NM_001349292Re-query CCDS DB by Protein ID:NP_001336221Link to BLAST:NP_001336221.1
Original member Current member NCBI NM_001349293.2 NP_001336222.1 Accepted alive Link to Nucleotide Sequence:NM_001349293.2Link to Protein Sequence:NP_001336222.1Re-query CCDS DB by Nucleotide ID:NM_001349293Re-query CCDS DB by Protein ID:NP_001336222Link to BLAST:NP_001336222.1
Original member Current member NCBI NM_001349294.2 NP_001336223.1 Accepted alive Link to Nucleotide Sequence:NM_001349294.2Link to Protein Sequence:NP_001336223.1Re-query CCDS DB by Nucleotide ID:NM_001349294Re-query CCDS DB by Protein ID:NP_001336223Link to BLAST:NP_001336223.1
Original member Current member NCBI NM_001349295.1 NP_001336224.1 Accepted alive Link to Nucleotide Sequence:NM_001349295.1Link to Protein Sequence:NP_001336224.1Re-query CCDS DB by Nucleotide ID:NM_001349295Re-query CCDS DB by Protein ID:NP_001336224Link to BLAST:NP_001336224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009921.1 1428 Q8N3P4-1 1428 100% 0 0
NP_001336221.1 1428 Q8N3P4-1 1428 100% 0 0
NP_001336222.1 1428 Q8N3P4-1 1428 100% 0 0
NP_001336223.1 1428 Q8N3P4-1 1428 100% 0 0
NP_001336224.1 1428 Q8N3P4-1 1428 100% 0 0

Chromosomal Locations for CCDS 46971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184824633 184824785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184826163 184826231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184832689 184832819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184834649 184834742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184838714 184838746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184839698 184839752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184843240 184843245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184849071 184849195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184849936 184850022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184852500 184852567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184853857 184854010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184854114 184854173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184855711 184855818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184859985 184860065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184862897 184863067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184866876 184866950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184868024 184868059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184868946 184869036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184869482 184869528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184870716 184870805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184886110 184886156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184894703 184894925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184898565 184898654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184900921 184900972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184913519 184913561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184914981 184915053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184915355 184915474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184920127 184920198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184924862 184924981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184926594 184926650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184928451 184928533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184929580 184929664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184930470 184930568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184936246 184936335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184940197 184940243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184957374 184957521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184964468 184964557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184966671 184966713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184971649 184971752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184982566 184982647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184983012 184983094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184993983 184994063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184996332 184996501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184999696 184999861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185024336 185024389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185048479 185048559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185051876 185052025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4287 nt):
ATGGAAAATGAACCAGACCATGAAAATGTGGAACAGAGCCTCTGTGCCAAGACGAGCGAAGAAGAGCTGA
ATAAGTCTTTCAATCTAGAAGCTTCACTTTCAAAATTCTCTTACATAGATATGGACAAGGAACTGGAGTT
CAAAAATGATCTGATTGATGACAAGGAGTTTGATATTCCTCAAGTTGATACTCCTCCAACACTGGAAAGC
ATACTAAATGAGACTGATGATGAAGATGAGTCTTTTATTCTTGAGGATCCTACATTGTTAAACATTGATA
CTATTGATTCTCACTCCTATGATACTTCATCTGTGGCAAGCTCAGATAGTGGTGACAGGACCAACTTAAA
AAGGAAGAAGAAATTACCTGATTCTTTTTCACTTCATGGATCAGTTATGCGCCATTCACTTTTGAAGGGA
ATTTCTGCCCAGATAGTGTCTGCAGCTGACAAAGTAGATGCTGGCTTGCCTACAGCAATTGCAGTATCCA
GTCTGATAGCAGTGGGTACATCTCATGGATTGGCTTTAATATTTGGAAAAGATCAGAATCAAGCTTTGCG
ACTCTGTCTGGGTAGCACTAGTGTTGGAGGTCAGTATGGCGCTATCTCTGCCCTCAGTATCAACAATGAT
TGCTCAAGACTTCTTTGTGGCTTTGCTAAAGGACAGATCACCATGTGGGATTTGGCCAGTGGAAAACTTC
TAAGATCAATAACAGATGCTCATCCTCCAGGAACAGCAATATTGCATATCAAGTTTACAGATGATCCAAC
TCTTGCAATTTGCAACGACAGCGGAGGCTCTGTTTTTGAATTGACATTTAAGAGAGTGATGGGAGTGAGA
ACCTGTGAATCTAGATGTCTGTTCAGTGGTTCCAAGGGTGAAGTCTGCTGTATTGAGCCTCTGCATTCTA
AGCCTGAGTTGAAAGATCATCCCATCACACAGTTTTCATTATTGGCCATGGCATCCTTGACAAAAATACT
GGTCATTGGATTGAAACCATCCTTGAAAGTATGGATGACTTTTCCCTATGGCCGGATGGATCCTTCCAGT
GTGCCACTGCTGGCCTGGCACTTTGTAGCAGTACAAAATTACGTGAATCCCATGCTTGCCTTCTGCAGAG
GAGATGTTGTTCATTTTCTATTGGTAAAGAGAGATGAATCTGGAGCAATACATGTTACTAAGCAAAAGCA
TCTTCACCTATACTATGACCTCATCAACTTTACCTGGATAAATTCACGCACAGTTGTGCTCTTAGACAGC
GTAGAGAAGTTGCATGTGATTGATCGGCAAACACAAGAGGAATTGGAGACAGTGGAGATCTCAGAAGTTC
AGCTGGTCTACAATAGCAGCCATTTCAAATCACTAGCCACTGGAGGAAATGTTAGCCAGGCACTGGCTTT
GGTTGGAGAGAAGGCTTGTTATCAATCCATCAGTAGCTATGGTGGTCAGATCTTTTATTTGGGGACAAAA
TCTGTTTATGTGATGATGCTGAGGAGCTGGAGAGAGAGAGTGGATCATCTCCTGAAACAAGATTGTCTTA
CAGAAGCGTTGGCTCTTGCGTGGTCTTTCCATGAAGGAAAAGCAAAAGCAGTAGTGGGATTATCAGGGGA
TGCCAGTAAGCGAAAGGCTATTGTTGCAGACCGGATGGTAGAAATCCTATTCCATTATGCAGATCGAGCT
CTGAAAAAGTGCCCAGACCAAGGAAAAATCCAAGTGATGGAGCAGCATTTTCAGGATATGGTGCCTGTCA
TAGTTGATTACTGCCTTCTGCTGCAGCGAAAGGATCTTTTATTTAGTCAGATGTATGATAAATTAAGTGA
GAATTCAGTGGCCAAAGGAGTATTTTTGGAGTGCCTTGAGCCATATATTTTAAGTGATAAATTGGTGGGA
ATCACACCCCAAGTAATGAAAGACTTGATTGTTCATTTCCAAGATAAAAAATTAATGGAAAATGTGGAAG
CGCTCATTGTACATATGGATATCACCAGCCTAGATATTCAGCAGGTAGTTCTCATGTGTTGGGAAAATCG
TTTATATGATGCTATGATCTATGTCTACAACAGAGGCATGAATGAATTTATTAGTCCAATGGAGAAACTT
TTCAGAGTCATTGCTCCTCCTCTGAATGCAGGAAAAACACTAACAGATGAACAAGTTGTTATGGGCAATA
AGCTCCTTGTATATATTAGCTGTTGTCTAGCAGGTCGTGCCTATCCCCTTGGTGACATCCCTGAAGATCT
GGTTCCCTTGGTTAAAAACCAGGTTTTTGAATTTCTAATTCGCCTGCATTCAGCAGAGGCTTCTCCTGAG
GAAGAAATCTATCCTTACATTCGGACTTTGCTACATTTTGACACAAGAGAATTTCTAAATGTATTGGCAC
TGACTTTTGAAGATTTTAAAAATGACAAGCAAGCTGTGGAATATCAACAGCGAATTGTGGATATTTTGTT
GAAAGTTATGGTGGAGAATTCAGACTTTACCCCCTCACAAGTAGGATGTCTCTTTACCTTCCTTGCTCGG
CAGCTTGCAAAGCCTGACAACACCTTGTTTGTAAACAGAACACTTTTTGATCAGGTCCTTGAATTCCTTT
GTAGTCCTGACGATGACTCCCGACACTCTGAAAGACAGCAGGTCCTTTTAGAATTGCTGCAGGCTGGAGG
CATAGTTCAATTTGAAGAGAGTCGACTCATCCGGATGGCAGAAAAAGCTGAGTTCTATCAAATTTGTGAA
TTTATGTATGAAAGAGAACACCAATATGATAAAATTATTGATTGCTACTTACGTGACCCTCTGCGAGAGG
AAGAAGTCTTTAATTACATTCACAATATCTTATCCATTCCCGGACACAGTGCAGAGGAGAAGCAGTCTGT
ATGGCAGAAAGCAATGGATCATATTGAGGAACTCGTGTCCCTGAAGCCTTGTAAAGCTGCGGAGCTGGTT
GCCACCCACTTTTCTGGACATATTGAAACGGTCATTAAAAAACTTCAGAACCAGGTTTTGCTTTTCAAAT
TTTTGAGGAGTCTTCTTGACCCAAGGGAAGGTATTCATGTAAATCAAGAATTACTGCAAATATCTCCTTG
TATCACAGAGCAGTTCATTGAGCTGTTGTGTCAGTTCAACCCAACCCAAGTTATAGAGACTCTGCAAGTC
CTTGAGTGCTACCGTCTGGAAGAAACTATTCAGATTACTCAGAAGTATCAACTTCATGAAGTCACCGCTT
ATCTATTGGAAAAGAAAGGAGATATTCATGGTGCCTTCCTAATAATGTTAGAGAGACTACAAAGCAAACT
TCAAGAGGTAACACATCAAGGTGAAAATACCAAAGAGGATCCCTCATTGAAGGATGTTGAAGATACTATG
GTGGAGACCATTGCTCTTTGCCAGAGAAATTCACATAATTTGAACCAGCAGCAACGTGAGGCACTTTGGT
TTCCGTTATTGGAGGCAATGATGGCCCCTCAGAAGCTGTCCAGTTCAGCCATTCCTCATCTACACTCTGA
AGCTCTGAAGTCTTTGACCATGCAAGTTTTAAATAGCATGGCAGCATTTATTGCCCTTCCATCAATCTTG
CAAAGAATCTTACAGGATCCAGTTTATGGAAAAGGAAAACTTGGAGAAATCCAGGGACTTATCTTGGGAA
TGTTAGATACCTTTAACTATGAACAAACCCTGCTGGAAACAACAACCAGCCTTCTAAACCAAGATCTCCA
TTGGTCATTGTGTAACCTGAGAGCTTCGGTCACCAGAGGACTGAATCCCAAACAAGATTACTGCTCTATA
TGTTTGCAGCAGTACAAGAGACGCCAAGAAATGGCTGATGAAATAATTGTCTTTAGCTGTGGCCATTTGT
ATCACTCATTCTGCCTACAAAACAAAGAATGCACTGTGGAATTTGAGGGCCAAACAAGATGGACATGCTA
CAAATGCAGTTCAAGTAACAAAGTAGGAAAACTCAGTGAAAATTCATCTGAAATTAAAAAGGGAAGGATA
ACCCCATCACAGGTAAAAATGTCTCCATCGTATCATCAGTCCAAAGGGGATCCCACTGCTAAAAAGGGAA
CCTCAGAACCTGTTCTGGATCCACAGCAAATCCAAGCATTTGATCAGCTTTGCCGTCTCTACCGAGGAAG
CTCCAGGCTGGCTCTCCTCACGGAACTCTCCCAGAATCGCAGCAGCGAGAGCTATAGGCCATTCAGTGGC
TCGCAGAGTGCTCCTGCTTTCAACAGCATCTTCCAGAATGAGAACTTCCAGCTGCAGCTCATTCCTCCAC
CTGTGACTGAGGATTGA

Translation (1428 aa):
MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIPQVDTPPTLES
ILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKG
ISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGKDQNQALRLCLGSTSVGGQYGAISALSINND
CSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVR
TCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSS
VPLLAWHFVAVQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTK
SVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRKAIVADRMVEILFHYADRA
LKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYILSDKLVG
ITPQVMKDLIVHFQDKKLMENVEALIVHMDITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKL
FRVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPE
EEIYPYIRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICE
FMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELV
ATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELLQISPCITEQFIELLCQFNPTQVIETLQV
LECYRLEETIQITQKYQLHEVTAYLLEKKGDIHGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTM
VETIALCQRNSHNLNQQQREALWFPLLEAMMAPQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSIL
QRILQDPVYGKGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRI
TPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRLALLTELSQNRSSESYRPFSG
SQSAPAFNSIFQNENFQLQLIPPPVTED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH