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Report for CCDS47005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47005.1 Public Homo sapiens 4 JAKMIP1 24 110 108 CCDS HistoryNCBI Gene:152789Re-query CCDS DB by CCDS ID:47005.1Re-query CCDS DB by GeneID:152789See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47005.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409021.9 ENSP00000386711.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409021.9Link to Ensembl Protein Viewer:ENSP00000386711.3Re-query CCDS DB by Nucleotide ID:ENST00000409021Re-query CCDS DB by Protein ID:ENSP00000386711
Original member Current member NCBI NM_001099433.2 NP_001092903.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099433.2Link to Protein Sequence:NP_001092903.1Re-query CCDS DB by Nucleotide ID:NM_001099433Re-query CCDS DB by Protein ID:NP_001092903Link to BLAST:NP_001092903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092903.1 831 Q96N16-2 831 100% 0 0

Chromosomal Locations for CCDS 47005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6026228 6026278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6029716 6029781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6035904 6036107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6040639 6040716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6042159 6042227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6048857 6048922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6049819 6049872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6050578 6050679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6054050 6054148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6056697 6056759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6060424 6060507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6062312 6062440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6064880 6065008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6078939 6078998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6080172 6080312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6081609 6081755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6084846 6084965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6085420 6085629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6105473 6105967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6112722 6112850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGTCGAAGAAAGGCCGGAGCAAGGGCGAGAAGCCCGAGATGGAGACGGACGCGGTGCAGATGGCCAACG
AGGAGCTGCGGGCCAAGCTGACCAGCATTCAGATCGAGTTCCAGCAGGAAAAAAGCAAGGTGGGCAAACT
GCGCGAGCGGCTGCAGGAGGCGAAGCTGGAGCGCGAGCAGGAGCAGCGACGGCACACGGCCTACATTTCG
GAGCTCAAGGCCAAGCTGCATGAGGAGAAGACCAAGGAGCTGCAGGCGCTGCGCGAGGGGCTCATCCGGC
AGCACGAGCAGGAGGCGGCGCGCACCGCCAAGATCAAGGAGGGCGAGCTGCAGCGGCTGCAGGCCACGCT
GAACGTGCTGCGCGACGGCGCGGCCGACAAGGTCAAGACGGCGCTGCTGACCGAGGCGCGCGAGGAGGCG
CGCAGGGCCTTCGATGGAGAGCGCCTGCGGCTGCAGCAGGAGATCCTGGAGCTCAAGGCAGCGCGCAAGC
AGGCAGAGGAGGCGCTCAGTAACTGCATGCAGGCTGACAAGACCAAGGCAGCCGACCTGCGTGCCGCCTA
CCAGGCGCACCAAGACGAGGTGCACCGCATCAAGCGCGAGTGCGAGCGCGACATCCGCAGGCTGATGGAT
GAGATCAAAGGGAAAGACCGTGTGATTCTGGCCTTGGAGAAGGAACTTGGCGTGCAGGCTGGGCAGACCC
AGAAGCTGCTTCTGCAGAAAGAGGCTTTGGATGAGCAGCTGGTTCAGGTCAAGGAGGCCGAGCGGCACCA
CAGTAGTCCAAAGAGAGAGCTCCCGCCCGGGATCGGGGACATGGTGGAGCTCATGGGCGTCCAGGATCAA
CATATGGACGAGCGAGATGTGAGGCGATTTCAACTAAAAATTGCTGAACTGAATTCAGTGATACGGAAGC
TGGAAGACAGAAATACGCTGTTGGCAGATGAGAGGAATGAACTGCTGAAACGCTCACGAGAGACCGAGGT
TCAGCTGAAGCCCCTGGTGGAGAAGAACAAGCGGATGAACAAGAAGAATGAGGATCTGTTGCAGAGTATC
CAGAGGATGGAGGAGAAAATCAAGAACCTCACGCGGGAAAACGTGGAAATGAAAGAAAAGCTGTCAGCGC
AGGCGTCTCTGAAGCGGCATACCTCCTTGAATGACCTCAGCCTGACGAGGGATGAGCAGGAGATCGAGTT
CCTGAGGCTGCAGGTGCTGGAGCAGCAGCACGTCATTGACGACCTCTCACTGGAGAGAGAACGGCTGTTG
CGCTCCAAAAGGCATCGAGGGAAAAGTCTGAAACCGCCCAAGAAGCATGTTGTGGAGACATTTTTTGGAT
TTGATGAGGAGTCTGTGGACTCAGAAACGTTGTCCGAAACATCCTACAACACAGACAGGACAGACAGGAC
CCCAGCCACGCCCGAAGAAGACTTGGACGATGCCACAGCCCGAGAGGAGGCTGACCTGCGCTTCTGCCAG
CTGACCCGGGAGTACCAGGCCCTGCAACGCGCCTACGCCCTGCTCCAGGAGCAGGTGGGAGGCACGCTGG
ACGCTGAGAGGGAGGCCCGGACTCGGGAGCAGCTACAAGCTGATCTGCTGAGGTGTCAGGCCAAAATCGA
AGATTTGGAGAAGTTACTGGTTGAGAAGGGACAGGATTCCAAGTGGGTTGAAGAGAAGCAGCTGCTCATC
AGAACAAACCAAGACTTGCTGGAAAAGATTTACAGACTGGAAATGGAAGAGAACCAGCTGAAGAATGAAA
TGCAAGACGCCAAGGATCAGAACGAGCTGTTAGAATTCAGAGTGCTAGAACTCGAAGAGAGAGAGAGGAG
GTCGCCAGCATTTAACCTCCAAATCACCACCTTCCCCGAGAACCACAGCAGCGCTCTCCAGCTGTTCTGT
CACCAGGAAGGAGTTAAGGATGTGAATGTTTCTGAACTTATGAAGAAATTAGATATCCTTGGCGATAACG
GGAATTTGAGAAATGAAGAACAGGTTGCAATAATCCAAGCTGGAACTGTGCTTGCCCTGTGTGAAAAGTG
GCTGAAGCAAATAGAGGGGACCGAGGCCGCCCTGACCCAGAAGATGCTGGACCTGGAGAAGGAGAAGGAC
CTGTTCAGCAGGCAGAAGGGCTACCTGGAAGAGGAGCTCGACTACCGGAAGCAAGCCCTTGACCAGGCTT
ACCTGAAAATCCAAGACCTGGAGGCCACACTGTACACAGCGCTGCAGCAGGAGCCGGGGCGGAGGGCCGG
TGAGGCGCTGAGCGAGGGCCAGCGGGAGGACCTGCAGGCTGCTGTGGAAAAGGTGCGCAGGCAGATCCTC
AGGCAGAGCCGCGAGTTCGACAGCCAGATCCTGCGGGAGCGCATGGAGCTGCTGCAGCAGGCCCAGCAGA
GAATCCGAGAACTGGAGGACAAACTGGAGTTTCAGAAGCGGCACCTGAAAGAACTGGAGGAAAAGTTTTT
GTTCCTTTTTTTGTTTTTCTCACTAGCATTCATTCTGTGGCCTTGA

Translation (831 aa):
MSKKGRSKGEKPEMETDAVQMANEELRAKLTSIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYIS
ELKAKLHEEKTKELQALREGLIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLTEAREEA
RRAFDGERLRLQQEILELKAARKQAEEALSNCMQADKTKAADLRAAYQAHQDEVHRIKRECERDIRRLMD
EIKGKDRVILALEKELGVQAGQTQKLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMVELMGVQDQ
HMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLQSI
QRMEEKIKNLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLL
RSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDDATAREEADLRFCQ
LTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDSKWVEEKQLLI
RTNQDLLEKIYRLEMEENQLKNEMQDAKDQNELLEFRVLELEERERRSPAFNLQITTFPENHSSALQLFC
HQEGVKDVNVSELMKKLDILGDNGNLRNEEQVAIIQAGTVLALCEKWLKQIEGTEAALTQKMLDLEKEKD
LFSRQKGYLEEELDYRKQALDQAYLKIQDLEATLYTALQQEPGRRAGEALSEGQREDLQAAVEKVRRQIL
RQSREFDSQILRERMELLQQAQQRIRELEDKLEFQKRHLKELEEKFLFLFLFFSLAFILWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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