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Report for CCDS47068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47068.1 Public Homo sapiens 4 RUFY3 24 110 108 CCDS HistoryNCBI Gene:22902Re-query CCDS DB by CCDS ID:47068.1Re-query CCDS DB by GeneID:22902See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417478.6 ENSP00000399771.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417478.6Link to Ensembl Protein Viewer:ENSP00000399771.2Re-query CCDS DB by Nucleotide ID:ENST00000417478Re-query CCDS DB by Protein ID:ENSP00000399771
Original member Current member NCBI NM_001130709.2 NP_001124181.1 Accepted alive Link to Nucleotide Sequence:NM_001130709.2Link to Protein Sequence:NP_001124181.1Re-query CCDS DB by Nucleotide ID:NM_001130709Re-query CCDS DB by Protein ID:NP_001124181Link to BLAST:NP_001124181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124181.1 506 Q7L099-2 506 100% 0 0

Chromosomal Locations for CCDS 47068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70704937 70705294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70762519 70762692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70763552 70763669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70764475 70764576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70768538 70768661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70773511 70773572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70775168 70775233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70778369 70778438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70783091 70783183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70784796 70784879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70788806 70788973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70789495 70789596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGCTGAGACCCCGCCGCCGCCCACCGCTGGTGCCGAAAGTTGCAGCGAGGAGCCGGCGAGGGGCGGGG
AGTGGCGGCCGGAGGAGCCGCGCCGCGCTCCCGCCGGGGGCACGGACCGAGAGGGCGAGGCGGGGCCGCC
GCCGGCCTCCCCCGCCGGGCAGTCGGAGCCCGACTCGCCGGTGGCCGCCCCCTTCTTCCTGCTGTACCCC
GGCGATGGAGGCGCCGGCTTCGGAGTGCGCCCGCCGCCGCAGCAGCAGCGCTCCTGGAGGACCCCGCCGT
CCCCCGGCTCACCGCTGCCCTTCCTGCTGCTGAGCTACCCGAGCGGCGGCGGCGGCAGCAGCGGCAGCGG
CAAGCACCATCCTAATTATCTCATGGCTAATGAACGCATGAACCTCATGAACATGGCCAAGCTGAGTATC
AAGGGCTTGATTGAATCAGCTCTGAACCTGGGGAGGACTCTTGACTCTGACTATGCACCTCTCCAGCAAT
TCTTTGTGGTGATGGAGCACTGTCTGAAACATGGCTTGAAAGCTAAAAAAACTTTTCTCGGACAAAATAA
ATCCTTCTGGGGGCCTCTAGAACTGGTAGAAAAGCTTGTTCCAGAAGCCGCAGAGATAACAGCAAGTGTT
AAAGATCTTCCAGGACTTAAGACACCAGTAGGTAGAGGAAGAGCCTGGCTTCGTTTGGCATTAATGCAAA
AGAAACTTTCAGAATATATGAAAGCTTTGATCAATAAGAAAGAACTTCTCAGTGAATTCTACGAACCCAA
TGCCCTCATGATGGAAGAAGAAGGAGCCATAATTGCTGGTCTGTTGGTGGGTCTGAATGTCATTGATGCC
AATTTCTGTATGAAAGGAGAAGACTTGGACTCTCAGGTTGGAGTTATAGATTTTTCAATGTATCTCAAGG
ACGGGAACAGCAGTAAAGGTACTGAAGGAGACGGTCAGATTACTGCAATTCTGGACCAGAAGAACTATGT
AGAAGAACTGAACAGACATTTGAATGCTACTGTAAACAACCTTCAGGCAAAAGTAGATGCATTAGAAAAA
TCCAACACTAAACTGACAGAGGAGCTTGCAGTTGCAAACAACAGGATCATTACCTTACAAGAAGAAATGG
AACGAGTTAAAGAGGAAAGTTCCTACATACTGGAATCCAATCGGAAGGGTCCCAAGCAAGACAGAACTGC
AGAAGGGCAAGCACTAAGTGAAGCAAGAAAGCATTTAAAAGAAGAGACACAATTACGATTGGATGTTGAG
AAAGAACTGGAGATGCAGATCAGCATGAGGCAGGAGATGGAATTGGCTATGAAGATGCTGGAGAAGGATG
TCTGTGAGAAGCAGGATGCCCTGGTATCTCTTCGGCAGCAGCTGGATGACCTCAGAGCTCTCAAGCATGA
ACTTGCCTTTAAGCTGCAGAGTTCAGACTTAGGAGTAAAACAGAAAAGTGAACTAAACAGTCGCTTGGAA
GAGAAGACTAATCAGATGGCTGCTACCATTAAACAACTTGAACAAAGGTAA

Translation (506 aa):
MAETPPPPTAGAESCSEEPARGGEWRPEEPRRAPAGGTDREGEAGPPPASPAGQSEPDSPVAAPFFLLYP
GDGGAGFGVRPPPQQQRSWRTPPSPGSPLPFLLLSYPSGGGGSSGSGKHHPNYLMANERMNLMNMAKLSI
KGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDA
NFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEK
SNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVE
KELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLE
EKTNQMAATIKQLEQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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