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Report for CCDS47159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47159.1 Public Homo sapiens 4 NAF1 24 110 108 CCDS HistoryNCBI Gene:92345Re-query CCDS DB by CCDS ID:47159.1Re-query CCDS DB by GeneID:92345See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422287.6 ENSP00000408963.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422287.6Link to Ensembl Protein Viewer:ENSP00000408963.2Re-query CCDS DB by Nucleotide ID:ENST00000422287Re-query CCDS DB by Protein ID:ENSP00000408963
Original member Current member NCBI NM_001128931.2 NP_001122403.1 Accepted alive Link to Nucleotide Sequence:NM_001128931.2Link to Protein Sequence:NP_001122403.1Re-query CCDS DB by Nucleotide ID:NM_001128931Re-query CCDS DB by Protein ID:NP_001122403Link to BLAST:NP_001122403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122403.1 389 Q96HR8-2 389 100% 0 0

Chromosomal Locations for CCDS 47159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 163126979 163127115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163133154 163133256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163137199 163137250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163140223 163140383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163145782 163145864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163148341 163148434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163164217 163164391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163166363 163166727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAGGTAGTGGAGGCCGCCGCCGCTCAGCTGGAAACTCTGAAATTCAATGGCACCGACTTTGGAGTTG
GGGAAGGTCCGGCGGCTCCGTCTCCGGGCTCTGCCCCTGTGCCAGGGACACAGCCGCCGCTACAGTCGTT
TGAGGGGTCCCCGGACGCTGGGCAGACCGTGGAGGTTAAGCCTGCCGGGGAGCAGCCTCTGCAGCCCGTT
CTGAACGCCGTCGCGGCCGGGACCCCGGCGCCGCAGCCACAGCCACCGGCTGAATCGCCGGCCTGCGGAG
ACTGCGTCACCTCCCCAGGAGCCGCAGAGCCTGCGCGGGCGCCGGACTCCTTGGAGACCTCGGACTCGGA
TTCGGACTCGGACAGTGAAACAGATTCAGATAGTTCAAGTTCATCGTCTTCCTCTTCATCTTCCTCATCG
TCGTCTTCTTCCTCTTGTATATCACTTCCTCCAGTGCTGTCAGATGGAGATGATGATTTACAAATTGAGA
AGGAAAATAAGAATTTTCCTCTTAAAACAAAAGATGAATTACTTCTTAATGAACTGCCTTCTGTTGAAGA
ACTCACTATTATTCTGCCTGAAGATATTGAGTTAAAGCCTCTTGGGATGGTTTCAAGTATTATTGAACAA
CTAGTAATAATTGAATCTATGACTAACCTACCTCCAGTTAATGAGGAGACTGTAATTTTTAAAAGTGATC
GACAAGCAGCAGGAAAGATATTCGAGATATTTGGACCTGTTGCACATCCATTTTATGTGTTACGGTTTAA
TTCTTCAGATCACATTGAGAGTAAAGGTATTAAAATAAAGGAGACTATGTATTTTGCTCCATCAATGAAA
GATTTCACTCAATATATATTCACAGAAAAACTAAAACAGGATAAGGGATCAGATGCATCATGGAAGAATG
ATCAGGAACCACCACCAGAGGCCTTAGATTTTAGTGATGATGAAAAAGAGAAGGAAGCCAAACAGAGGAA
AAAATCTCAGATTCAAGGCCGGAAAAAACTCAAATCTGAATTTAATGAGCCTGGTACAGGTATATCTCAC
AGATATTGTGGCCTCGGATCCAGACCATTGCAGTCAAGTGAGTCACACAAACTTTTTGGTTTCCAAATGC
ATATAAAAGTTACGTTTACATGCTACTTTAGTTTATTAAGTATGCAATAG

Translation (389 aa):
MEVVEAAAAQLETLKFNGTDFGVGEGPAAPSPGSAPVPGTQPPLQSFEGSPDAGQTVEVKPAGEQPLQPV
LNAVAAGTPAPQPQPPAESPACGDCVTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSS
SSSSSCISLPPVLSDGDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQ
LVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMK
DFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQGRKKLKSEFNEPGTGISH
RYCGLGSRPLQSSESHKLFGFQMHIKVTFTCYFSLLSMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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