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Report for CCDS47649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47649.1 Public Homo sapiens 7 TMEM130 24 110 108 CCDS HistoryNCBI Gene:222865Re-query CCDS DB by CCDS ID:47649.1Re-query CCDS DB by GeneID:222865See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47649.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345589.4 ENSP00000330262.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345589.4Link to Ensembl Protein Viewer:ENSP00000330262.4Re-query CCDS DB by Nucleotide ID:ENST00000345589Re-query CCDS DB by Protein ID:ENSP00000330262
Original member Current member NCBI NM_001134451.2 NP_001127923.1 Accepted alive Link to Nucleotide Sequence:NM_001134451.2Link to Protein Sequence:NP_001127923.1Re-query CCDS DB by Nucleotide ID:NM_001134451Re-query CCDS DB by Protein ID:NP_001127923Link to BLAST:NP_001127923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127923.1 321 Q8N3G9-3 321 100% 0 0

Chromosomal Locations for CCDS 47649.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 98848056 98848208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98848583 98848695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98851421 98851623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98855240 98855324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98856017 98856183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98860179 98860338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98869777 98869861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCCCAGGCAGTGTGGTCGCGCCTCGGCCGCATCCTCTGGCTTGCCTGCCTCCTGCCCTGGGCCCCGG
CAGGGGTGGCCGCAGAGTTCCTCGTGGGGGACCTTGTTGTCACCCAGAACACTTCCCTACCCTGGCCCAG
CTCCTATCTCACTAAGACCGTCCTGAAAGTCTCCTTCCTCCTCCACGACCCGAGCAACTTCCTCAAGACC
GCCTTGTTTCTCTACAGCTGGGACTTCGGGGACGGGACCCAGATGGTGACTGAAGACTCCGTGGTCTATT
ATAACTATTCCATCATCGGGACCTTCACCGTGAAGCTCAAAGTGGTGGCGGAGTGGGAAGAGGTGGAGCC
GGATGCCACGAGGGCTGTGAAGCAGAAGACCGGGGACTTCTCCGCCTCGCTGAAGCTGCAGGAAACCCTT
CGAGGCATCCAAGTGTTGGGGCCCACCCTAATTCAGACCTTCCAAAAGATGACCGTGACCTTGAACTTCC
TGGGGAGCCCTCCTCTGACTGTGTGCTGGCGTCTCAAGCCTGAGTGCCTCCCGCTGGAGGAAGGGGAGTG
CCACCCTGTGTCCGTGGCCAGCACAGCGTACAACCTGACCCACACCTTCAGGGACCCTGGGGACTACTGC
TTCAGCATCCGGGCCGAGAATATCATCAGCAAGACACATCAGTACCACAAGATCCAGGTGTGGCCCTCCA
GAATCCAGCCGGCTGTCTTTGCTTTCCCATGTGCTACACTTATCACTGTGATGTTGGCCTTCATCATGTA
CATGACCCTGCGGAATGCCACTCAGCAAAAGGACATGGTGGAGAACCCGGAGCCACCCTCTGGGGTCAGG
TGCTGCTGCCAGATGTGCTGTGGGCCTTTCTTGCTGGAGACTCCATCTGAGTACCTGGAAATTGTTCGTG
AGAACCACGGGCTGCTCCCGCCCCTCTATAAGTCTGTCAAAACTTACACCGTGTGA

Translation (321 aa):
MAQAVWSRLGRILWLACLLPWAPAGVAAEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKT
ALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETL
RGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYNLTHTFRDPGDYC
FSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYMTLRNATQQKDMVENPEPPSGVR
CCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSVKTYTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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