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Report for CCDS47745.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47745.1 Public Homo sapiens 7 REPIN1 24 110 108 CCDS HistoryNCBI Gene:29803Re-query CCDS DB by CCDS ID:47745.1Re-query CCDS DB by GeneID:29803See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47745.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489432.7 ENSP00000417291.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000489432.7Link to Ensembl Protein Viewer:ENSP00000417291.2Re-query CCDS DB by Nucleotide ID:ENST00000489432Re-query CCDS DB by Protein ID:ENSP00000417291
Original member Current member NCBI NM_001099695.2 NP_001093165.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099695.2Link to Protein Sequence:NP_001093165.1Re-query CCDS DB by Nucleotide ID:NM_001099695Re-query CCDS DB by Protein ID:NP_001093165Link to BLAST:NP_001093165.1
Original member Current member NCBI NM_001362745.2 NP_001349674.1 Accepted alive Link to Nucleotide Sequence:NM_001362745.2Link to Protein Sequence:NP_001349674.1Re-query CCDS DB by Nucleotide ID:NM_001362745Re-query CCDS DB by Protein ID:NP_001349674Link to BLAST:NP_001349674.1
Original member Current member NCBI NM_001388038.1 NP_001374967.1 Accepted alive Link to Nucleotide Sequence:NM_001388038.1Link to Protein Sequence:NP_001374967.1Re-query CCDS DB by Nucleotide ID:NM_001388038Re-query CCDS DB by Protein ID:NP_001374967Link to BLAST:NP_001374967.1
Original member Current member NCBI NM_001388039.1 NP_001374968.1 Accepted alive Link to Nucleotide Sequence:NM_001388039.1Link to Protein Sequence:NP_001374968.1Re-query CCDS DB by Nucleotide ID:NM_001388039Re-query CCDS DB by Protein ID:NP_001374968Link to BLAST:NP_001374968.1
Original member Current member NCBI NM_001388040.1 NP_001374969.1 Accepted alive Link to Nucleotide Sequence:NM_001388040.1Link to Protein Sequence:NP_001374969.1Re-query CCDS DB by Nucleotide ID:NM_001388040Re-query CCDS DB by Protein ID:NP_001374969Link to BLAST:NP_001374969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093165.1 624 Q9BWE0-4 624 100% 0 0
NP_001349674.1 624 Q9BWE0-4 624 100% 0 0
NP_001374967.1 624 Q9BWE0-4 624 100% 0 0
NP_001374968.1 624 Q9BWE0-4 624 100% 0 0
NP_001374969.1 624 Q9BWE0-4 624 100% 0 0

Chromosomal Locations for CCDS 47745.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 150369712 150369868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150371228 150372945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAA
GCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCA
GCTCTGCAGTCTCCAGGCAGAGGAAGAACCGATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGC
CTGGCCCAGCCCCGACTCCTTTCTGGGCCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCG
GGCTGAGGCAACAAGGCACGTCAGTGGCCCAGTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGC
CCACTGTCGAAGGCACTTCCCTGGCTGGGTGGCTCTGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTG
CCCTTGCCCTGCCCTGAGTGTGGCCGTCGCTTTCGCCATGCCCCCTTCTTAGCACTGCACCGCCAGGTCC
ATGCTGCTGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTGTGGGCAGAGCTTCCGAGGCTGGGTGGC
CCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAAAGCGGCCCATCGCTTGTCCCAAATGCGAGAGACGC
TTCTGGCGACGAAAGCAGCTTCGAGCTCATCTGCGGCGGTGCCACCCTCCCGCCCCGGAGGCCCGGCCCT
TCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAGTGGGACCAGCTAGTTGCCCACAAGCGGGTGCACGT
AGCTGAGGCCCTGGAGGAGGCCGCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCCGCGGTGACC
GCCCCCCGGCCCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTGTTGTGGCAAGCGCTTCCGGC
ACAAGCCCAACTTGATCGCTCACCGCCGCGTGCACACGGGCGAGCGGCCCCACCAGTGCCCCGAGTGCGG
GAAGCGCTTTACCAATAAGCCCTATCTGACTTCGCACCGGCGCATCCACACCGGCGAGAAGCCCTACCCG
TGCAAAGAGTGCGGCCGCCGCTTCCGGCACAAACCCAACCTGCTGTCTCACAGCAAGATTCACAAGCGAT
CCGAGGGGTCGGCCCAGGCCGCCCCCGGCCCGGGGAGCCCCCAGCTGCCAGCCGGCCCCCAGGAGTCCGC
GGCCGAGCCCACCCCGGCGGTACCTCTGAAACCGGCCCAGGAGCCGCCGCCAGGGGCCCCGCCAGAGCAC
CCGCAGGACCCGATCGAAGCCCCCCCCTCCCTCTACAGCTGCGACGACTGCGGCAGGAGCTTCCGGCTGG
AGCGCTTCCTGCGGGCCCACCAGCGGCAGCACACCGGGGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAA
GAACTTCGGCAAGAAGACGCACCTGGTGGCGCACTCGCGCGTGCACTCCGGCGAGCGGCCCTTCGCCTGC
GAGGAGTGCGGCCGCCGCTTCTCCCAGGGCAGCCATCTGGCGGCGCATCGGCGCGACCACGCCCCCGATC
GGCCCTTCGTGTGTCCCGACTGCGGCAAGGCCTTCCGCCACAAACCCTACCTGGCGGCGCACCGGCGCAT
CCACACCGGCGAGAAGCCCTACGTCTGCCCCGACTGCGGCAAAGCCTTCAGCCAGAAGTCCAACCTGGTG
TCGCACCGGCGCATCCACACGGGCGAGCGGCCCTACGCCTGTCCCGACTGCGACCGCAGCTTCAGCCAGA
AGTCCAACCTCATCACCCACCGCAAGAGCCACATCCGGGACGGCGCCTTCTGCTGTGCCATCTGTGGCCA
GACCTTCGACGACGAGGAGAGACTCCTGGCCCACCAGAAGAAGCACGATGTCTGA

Translation (624 aa):
MGIGVSLLLQFSLTPGGYRSVGRSRRCSRGSIPRNIPKRSWKKPHPQLCSLQAEEEPMLERRCRGPLAMG
LAQPRLLSGPSQESPQTLGKESRGLRQQGTSVAQSGAQAPGRAHRCAHCRRHFPGWVALWLHTRRCQARL
PLPCPECGRRFRHAPFLALHRQVHAAATPDLGFACHLCGQSFRGWVALVLHLRAHSAAKRPIACPKCERR
FWRRKQLRAHLRRCHPPAPEARPFICGNCGRSFAQWDQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVT
APRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYP
CKECGRRFRHKPNLLSHSKIHKRSEGSAQAAPGPGSPQLPAGPQESAAEPTPAVPLKPAQEPPPGAPPEH
PQDPIEAPPSLYSCDDCGRSFRLERFLRAHQRQHTGERPFTCAECGKNFGKKTHLVAHSRVHSGERPFAC
EECGRRFSQGSHLAAHRRDHAPDRPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLV
SHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEERLLAHQKKHDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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