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Report for CCDS47778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47778.1 Public Homo sapiens 8 FAM90A7 24 110 108 CCDS HistoryNCBI Gene:441317Re-query CCDS DB by CCDS ID:47778.1Re-query CCDS DB by GeneID:441317See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 47778.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650288.1 ENSP00000497076.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650288.1Link to Ensembl Protein Viewer:ENSP00000497076.1Re-query CCDS DB by Nucleotide ID:ENST00000650288Re-query CCDS DB by Protein ID:ENSP00000497076
Original member Current member NCBI NM_001397387.1 NP_001384316.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001397387.1Link to Protein Sequence:NP_001384316.1Re-query CCDS DB by Nucleotide ID:NM_001397387Re-query CCDS DB by Protein ID:NP_001384316Link to BLAST:NP_001384316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001384316.1 464 A6NKC0 464 100% 0 0

Chromosomal Locations for CCDS 47778.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 7556700 7557662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7558328 7558436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7558895 7559094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 7559590 7559712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGATGGCACGTCGGGACCCCAAATCTTGGGCCAAGAGACTGGTGAGAGCCCAGACCCTCCAGAAGCAGC
GGAGGGCCCCAGTTGGGCCAAGGTCTCCCCCGCCCGATGAAGAAGATCCCAGGCTCAAGTGCAAAAACTG
CGGGGCCTTTGGCCACACGGCCAGAAGTACCAGGTGCCCCATGAAGTGCTGGAAGGCAGCCCTGGTTCCA
GCGACCTTGGGGAAAAAGGAAGGGAAGGAAAACCTGAAACCATGGAAGCCCCGGGCTGAAGCCAACCCGG
GGCCCTTGAACAAGGATAAGGGAGAGAAGGAAGAGAGACCAAGGCAACAAGACCCGCAGAGGAACGCTCT
CCTCCACATGTTTTCCGGGAAACCTCCAGAGAAGCCGCTGCCGAATGGAAAAGGATCCACGGAATCTTCC
GAGCATCTGAGGGTTGCAAGCGGGCCAATGCCGGTCCACACAACCAGTAAGAGGCCGCGCGTGGACCCTG
TCCTCGCTGATCGCTCAGCTACCGAAATGTCTGGCAGGGGCTCCGTCTTGGCTTCACTGTCTCCCCTCAG
AAAAGCCAGCCTGAGCTCCTCCTCAAGTCTTGGACCAAAGGAAAGACAGACAGGGGCTGCGGCCGACATC
CCTCAGCCTGCATTCAGGCACCAGGGCCCCGAGCCTCTCCTCGTGGTGAAGCCGACACACAGCAGCCCTG
AGGGTGGCTGCCGAGAAGTTCCCCAGGCTGCCTCCAAAACCCACGGCCTGCTCCAGGCCGTCAGACCCCA
GGCACAAGACAAACGTCCTGCGGTGACCTCACAGCCCTGCCCGCCAGCCGCCACACACAGCTTGGGCCTA
GGCTCCAATCTCAGCTTCGGGCCAGGAGCCAAGAGACCTGCCCAGGCTCCGATTCAGGCTTGCCTGAACT
TCCCCAAGAAACCGAGACTGGGTCCCTTCCAGATCCCCGAAAGCGCCATCCAGGGAGGTGAGCTGCGGGC
CCCGGAGAATCTCCAACCTCCGCCAGCCGCAACCGAACTTGGACCAAGTACGTCGCCCCAGATGGGCAGG
AGGACACCGGCCCAGGTGCCCAGCGTCGACCGGCAGCCTCCGCACAGCACACCTTGCCTGCCTACTGCCC
AGGCCTGCACCATGTCCCATCACCCAGCGGCCGGCCATGATGGGGCCCAGCCTCTCAGAGTGCTCTTCCG
GAGACTGGAAAACGGACGCTGGAGCTCCAGCCTCCTGGCCGCCCCCTCATTTCACTCTCCTGAGAAGCCG
GGAGCCTTCCTCGCTCAGAGCCCTCATGTGTCAGAGAAGTCTGAGGCTCCCTGTGTTCGTGTCCCACCGA
GCGTCCTCTATGAGGACCTTCAGGTTTCCTCCTCCTCAGAGGACAGCGATTCTGACCTGGAGTGA

Translation (464 aa):
MMARRDPKSWAKRLVRAQTLQKQRRAPVGPRSPPPDEEDPRLKCKNCGAFGHTARSTRCPMKCWKAALVP
ATLGKKEGKENLKPWKPRAEANPGPLNKDKGEKEERPRQQDPQRNALLHMFSGKPPEKPLPNGKGSTESS
EHLRVASGPMPVHTTSKRPRVDPVLADRSATEMSGRGSVLASLSPLRKASLSSSSSLGPKERQTGAAADI
PQPAFRHQGPEPLLVVKPTHSSPEGGCREVPQAASKTHGLLQAVRPQAQDKRPAVTSQPCPPAATHSLGL
GSNLSFGPGAKRPAQAPIQACLNFPKKPRLGPFQIPESAIQGGELRAPENLQPPPAATELGPSTSPQMGR
RTPAQVPSVDRQPPHSTPCLPTAQACTMSHHPAAGHDGAQPLRVLFRRLENGRWSSSLLAAPSFHSPEKP
GAFLAQSPHVSEKSEAPCVRVPPSVLYEDLQVSSSSEDSDSDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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