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Report for CCDS47821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47821.1 Public Homo sapiens 8 DMTN 24 110 108 CCDS HistoryNCBI Gene:2039Re-query CCDS DB by CCDS ID:47821.1Re-query CCDS DB by GeneID:2039See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47821.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443491.6 ENSP00000397904.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443491.6Link to Ensembl Protein Viewer:ENSP00000397904.2Re-query CCDS DB by Nucleotide ID:ENST00000443491Re-query CCDS DB by Protein ID:ENSP00000397904
Original member Current member EBI ENST00000523782.6 ENSP00000429234.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523782.6Link to Ensembl Protein Viewer:ENSP00000429234.2Re-query CCDS DB by Nucleotide ID:ENST00000523782Re-query CCDS DB by Protein ID:ENSP00000429234
Original member Current member NCBI NM_001114139.4 NP_001107611.1 Accepted alive Link to Nucleotide Sequence:NM_001114139.4Link to Protein Sequence:NP_001107611.1Re-query CCDS DB by Nucleotide ID:NM_001114139Re-query CCDS DB by Protein ID:NP_001107611Link to BLAST:NP_001107611.1
Original member Current member NCBI NM_001323387.2 NP_001310316.1 Accepted alive Link to Nucleotide Sequence:NM_001323387.2Link to Protein Sequence:NP_001310316.1Re-query CCDS DB by Nucleotide ID:NM_001323387Re-query CCDS DB by Protein ID:NP_001310316Link to BLAST:NP_001310316.1
Original member Current member NCBI NM_001387736.1 NP_001374665.1 Accepted alive Link to Nucleotide Sequence:NM_001387736.1Link to Protein Sequence:NP_001374665.1Re-query CCDS DB by Nucleotide ID:NM_001387736Re-query CCDS DB by Protein ID:NP_001374665Link to BLAST:NP_001374665.1
Original member Current member NCBI NM_001387752.1 NP_001374681.1 Accepted alive Link to Nucleotide Sequence:NM_001387752.1Link to Protein Sequence:NP_001374681.1Re-query CCDS DB by Nucleotide ID:NM_001387752Re-query CCDS DB by Protein ID:NP_001374681Link to BLAST:NP_001374681.1
Original member Current member NCBI NM_001387756.1 NP_001374685.1 Accepted alive Link to Nucleotide Sequence:NM_001387756.1Link to Protein Sequence:NP_001374685.1Re-query CCDS DB by Nucleotide ID:NM_001387756Re-query CCDS DB by Protein ID:NP_001374685Link to BLAST:NP_001374685.1
Original member Current member NCBI NM_001387757.1 NP_001374686.1 Accepted alive Link to Nucleotide Sequence:NM_001387757.1Link to Protein Sequence:NP_001374686.1Re-query CCDS DB by Nucleotide ID:NM_001387757Re-query CCDS DB by Protein ID:NP_001374686Link to BLAST:NP_001374686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107611.1 358 Q08495-3 358 100% 0 0
NP_001310316.1 358 Q08495-3 358 100% 0 0
NP_001374665.1 358 Q08495-3 358 100% 0 0
NP_001374681.1 358 Q08495-3 358 100% 0 0
NP_001374685.1 358 Q08495-3 358 100% 0 0
NP_001374686.1 358 Q08495-3 358 100% 0 0

Chromosomal Locations for CCDS 47821.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22066876 22066893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22067527 22067682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22069016 22069060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22069419 22069518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22069881 22069937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22070182 22070334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22072326 22072450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22073730 22073835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22080180 22080244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22080412 22080460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22080618 22080625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22081113 22081193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22081350 22081463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGAACGGCTGCAGAAGGCCAAGATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCA
AGGACAAGGCCATCCTGGACATCGAGCGGCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCT
CCTGGAACACGTGGAGCTGCCTCGCAGCCGCGAGCGCTCGCTGTCACCCAAATCCACATCCCCCCCACCA
TCCCCAGAGGTGTGGGCGGACAGCCGGTCGCCTGGAATCATCTCTCAGGCCTCGGCCCCCAGAACCACTG
GAACCCCCCGGACCAGCCTGCCCCATTTCCACCACCCTGAGACCTCCCGCCCAGATTCCAACATCTACAA
GAAGCCTCCCATCTATAAGCAGAGAGAGTCCGTGGGAGGCAGCCCTCAGACCAAGCACCTCATCGAGGAT
CTCATCATCGAGTCATCCAAGTTTCCTGCAGCCCAGCCCCCAGACCCCAACCAGCCAGCCAAAATCGAAA
CCGACTACTGGCCATGCCCCCCGTCTCTGGCTGTTGTGGAGACAGAATGGAGGAAGCGGAAGGCGTCTCG
GAGGGGAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGAGAGGAGATGAAGGCTCTCAGGGAG
CGTCAGAGAGAGGAACTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGAAA
AGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTTGCACCA
GGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGGCTACAGTCCACAGAG
TTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGGCCTGCAGATCTATCCCTATGAAATGCTAGTGGTGA
CCAACAAGGGGCGAACCAAGCTGCCACCGGGGGTGGATCGGATGCGGCTTGAGAGGCATCTGTCTGCCGA
GGACTTCTCAAGGGTATTTGCCATGTCCCCTGAAGAGTTTGGCAAGCTGGCTCTGTGGAAGCGGAATGAG
CTCAAGAAGAAGGCCTCTCTCTTCTGA

Translation (358 aa):
MERLQKAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSPKSTSPPP
SPEVWADSRSPGIISQASAPRTTGTPRTSLPHFHHPETSRPDSNIYKKPPIYKQRESVGGSPQTKHLIED
LIIESSKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRE
RQREELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSSLPAYGRTTLSRLQSTE
FSPSGSETGSPGLQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNE
LKKKASLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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