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Report for CCDS47880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47880.1 Public Homo sapiens 8 ZBTB10 24 110 108 CCDS HistoryNCBI Gene:65986Re-query CCDS DB by CCDS ID:47880.1Re-query CCDS DB by GeneID:65986See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430430.5 ENSP00000387462.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430430.5Link to Ensembl Protein Viewer:ENSP00000387462.1Re-query CCDS DB by Nucleotide ID:ENST00000430430Re-query CCDS DB by Protein ID:ENSP00000387462
Original member Current member EBI ENST00000455036.8 ENSP00000412036.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455036.8Link to Ensembl Protein Viewer:ENSP00000412036.3Re-query CCDS DB by Nucleotide ID:ENST00000455036Re-query CCDS DB by Protein ID:ENSP00000412036
Original member Current member NCBI NM_001105539.3 NP_001099009.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105539.3Link to Protein Sequence:NP_001099009.1Re-query CCDS DB by Nucleotide ID:NM_001105539Re-query CCDS DB by Protein ID:NP_001099009Link to BLAST:NP_001099009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099009.1 871 Q96DT7-1 871 100% 0 0

Chromosomal Locations for CCDS 47880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 80486811 80487782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80499494 80500382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80513910 80514008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80518403 80518579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80518782 80518954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80519223 80519528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGTCGTTCAGTGAAATGAACCGCAGGACGCTGGCGTTCCGAGGAGGCGGGTTGGTCACCGCTAGCGGCG
GCGGCTCCACGAACAATAACGCTGGCGGGGAGGCCTCAGCTTGGCCTCCGCAGCCCCAGCCGAGACAGCC
CCCGCCGCCAGCGCCGCCCGCGCTTCAGCCGCCTAATGGGCGGGGGGCCGACGAGGAAGTGGAATTGGAG
GGCCTGGAGCCCCAAGACCTGGAGGCCTCCGCCGGGCCGGCCGCCGGCGCCGCCGAGGAAGCCAAGGAGT
TGCTGCTCCCCCAAGACGCGGGCGGCCCCACCTCGCTTGGCGGTGGCGCGGGGGGCCCCCTGCTAGCGGA
AAGGAACCGTCGGACTCTGGCCTTCCGAGGCGGCGGCGGCGGGGGTCTCGGCAACAATGGCAGTAGCCGC
GGCCGCCCCGAGACCTCGGTGTGGCCCTTGAGGCATTTCAATGGGCGAGGGCCGGCGACTGTGGATCTGG
AGCTGGACGCGCTGGAGGGGAAGGAGTTGATGCAGGACGGCGCGTCCCTGAGCGACAGCACCGAGGACGA
GGAGGAGGGGGCGAGCCTGGGCGACGGCAGCGGGGCGGAAGGCGGCAGCTGCAGCAGCAGCAGGCGGTCG
GGCGGCGATGGCGGGGACGAAGTGGAGGGCAGCGGTGTGGGAGCTGGCGAAGGAGAGACTGTCCAGCACT
TCCCGCTCGCGCGGCCCAAGTCTCTAATGCAGAAGCTCCAATGCTCCTTCCAGACCTCCTGGCTCAAGGA
CTTTCCCTGGCTGCGCTATTCCAAGGATACTGGTCTTATGTCTTGCGGCTGGTGCCAAAAGACCCCTGCA
GATGGGGGAAGCGTGGACCTTCCCCCAGTGGGGCATGATGAGCTTTCGCGAGGGACCCGCAACTACAAGA
AAACCCTCCTCCTGAGGCACCACGTCTCTACCGAGCACAAACTCCACGAAGCCAACGCCCAGGAGTCAGA
AATACCATCAGAGGAGGGGTACTGTGACTTTAATAGTAGGCCAAATGAGAACTCTTATTGCTATCAACTT
CTGCGACAACTAAATGAACAGAGAAAGAAAGGTATTCTTTGTGATGTCAGCATTGTGGTAAGCGGAAAAA
TCTTCAAAGCTCATAAGAACATCCTGGTTGCAGGCAGCCGTTTCTTTAAGACTTTATATTGCTTTTCAAA
CAAAGAAAGCCCTAACCAAAACAATACTACCCACTTAGATATTGCTGCAGTTCAAGGTTTTTCAGTCATC
TTGGACTTCTTGTATTCTGGTAACCTGGTGCTCACAAGCCAAAATGCCATTGAAGTTATGACCGTGGCCA
GCTATCTTCAAATGAGTGAAGTTGTTCAAACTTGCCGAAATTTCATTAAAGATGCCTTAAATATAAGCAT
TAAATCAGAAGCTCCAGAGTCTGTAGTTGTGGACTATAATAATAGAAAACCAGTTAATAGAGATGGTCTG
TCTTCATCACGGGATCAAAAAATTGCCAGTTTTTGGGCAACACGGAATCTTACCAATTTGGCAAGTAATG
TAAAGATTGAAAATGATGGTTGTAATGTCGACGAGGGCCAAATAGAAAACTACCAAATGAATGACAGTAG
TTGGGTCCAGGATGGATCTCCTGAAATGGCTGAAAATGAATCTGAAGGTCAAACAAAAGTGTTTATTTGG
AATAATATGGGCTCCCAGGGAATTCAAGAGACTGGCAAAACAAGGAGGAAAAACCAAACTACAAAAAGAT
TTATTTATAATATTCCACCTAATAATGAAACGAATTTAGAAGATTGCTCAGTAATGCAGCCACCTGTTGC
CTATCCAGAAGAAAATACACTACTCATCAAGGAAGAACCAGATTTAGATGGTGCTCTACTCTCGGGGCCA
GATGGTGATAGGAATGTGAATGCAAATTTATTGGCTGAAGCTGGCACTAGTCAAGATGGAGGTGATGCTG
GTACTTCACATGATTTCAAGTATGGTTTGATGCCTGGTCCTTCAAATGATTTCAAGTATGGATTGATACC
AGGTACTTCAAATGATTTCAAGTATGGATTGATACCAGGTGCTTCAAATGATTTCAAGTATGGATTATTG
CCAGAATCTTGGCCAAAACAAGAAACCTGGGAAAATGGTGAATCATCTCTAATCATGAACAAGTTAAAAT
GCCCTCATTGTAGCTATGTAGCCAAATACAGACGAACACTAAAAAGGCACTTGCTCATTCACACAGGAGT
GAGATCATTTAGCTGTGATATTTGTGGAAAACTGTTTACTCGAAGAGAACATGTAAAAAGACATTCCCTG
GTGCATAAAAAGGATAAAAAATACAAATGTATGGTGTGTAAGAAGATCTTCATGTTAGCAGCCAGTGTTG
GAATAAGACATGGATCTCGACGTTATGGTGTTTGTGTAGACTGTGCAGATAAATCACAGCCAGGAGGGCA
AGAAGGTGTAGATCAGGGACAGGATACAGAATTCCCTCGGGATGAAGAATACGAGGAGAATGAAGTAGGA
GAAGCTGATGAAGAGCTAGTTGATGATGGAGAAGATCAGAATGATCCCTCTCGATGGGATGAATCAGGAG
AAGTTTGTATGTCTCTAGATGATTAA

Translation (871 aa):
MSFSEMNRRTLAFRGGGLVTASGGGSTNNNAGGEASAWPPQPQPRQPPPPAPPALQPPNGRGADEEVELE
GLEPQDLEASAGPAAGAAEEAKELLLPQDAGGPTSLGGGAGGPLLAERNRRTLAFRGGGGGGLGNNGSSR
GRPETSVWPLRHFNGRGPATVDLELDALEGKELMQDGASLSDSTEDEEEGASLGDGSGAEGGSCSSSRRS
GGDGGDEVEGSGVGAGEGETVQHFPLARPKSLMQKLQCSFQTSWLKDFPWLRYSKDTGLMSCGWCQKTPA
DGGSVDLPPVGHDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQESEIPSEEGYCDFNSRPNENSYCYQL
LRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNTTHLDIAAVQGFSVI
LDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNRKPVNRDGL
SSSRDQKIASFWATRNLTNLASNVKIENDGCNVDEGQIENYQMNDSSWVQDGSPEMAENESEGQTKVFIW
NNMGSQGIQETGKTRRKNQTTKRFIYNIPPNNETNLEDCSVMQPPVAYPEENTLLIKEEPDLDGALLSGP
DGDRNVNANLLAEAGTSQDGGDAGTSHDFKYGLMPGPSNDFKYGLIPGTSNDFKYGLIPGASNDFKYGLL
PESWPKQETWENGESSLIMNKLKCPHCSYVAKYRRTLKRHLLIHTGVRSFSCDICGKLFTRREHVKRHSL
VHKKDKKYKCMVCKKIFMLAASVGIRHGSRRYGVCVDCADKSQPGGQEGVDQGQDTEFPRDEEYEENEVG
EADEELVDDGEDQNDPSRWDESGEVCMSLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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