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Report for CCDS47892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47892.1 Public Homo sapiens 8 CIBAR1 24 110 108 CCDS HistoryNCBI Gene:137392Re-query CCDS DB by CCDS ID:47892.1Re-query CCDS DB by GeneID:137392See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518322.6 ENSP00000429367.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518322.6Link to Ensembl Protein Viewer:ENSP00000429367.1Re-query CCDS DB by Nucleotide ID:ENST00000518322Re-query CCDS DB by Protein ID:ENSP00000429367
Original member Current member NCBI NM_145269.5 NP_660312.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145269.5Link to Protein Sequence:NP_660312.2Re-query CCDS DB by Nucleotide ID:NM_145269Re-query CCDS DB by Protein ID:NP_660312Link to BLAST:NP_660312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660312.2 289 A1XBS5-1 289 100% 0 0

Chromosomal Locations for CCDS 47892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93700648 93700673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93701224 93701458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93703620 93703688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93704909 93705010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93708011 93708016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93709771 93709875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93718675 93718788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93726394 93726513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93728205 93728297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGATGAGGCGCACCCTGGAAAACCGGAACGCTCAAACGAAACAACTGCAAACAGCTGTCTCAAATGTGG
AGAAGCATTTTGGAGAACTGTGCCAAATCTTCGCTGCCTATGTGCGGAAAACTGCCAGGCTGAGAGACAA
AGCAGACCTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGACCCCGCATTTAAAGCTGGGCCTG
ATGAACTTTGCAGATGAGTTTGCCAAACTTCAGGATTATCGACAAGCAGAGGTTGAAAGACTTGAAGCCA
AAGTAGTTGAACCCTTGAAAACTTATGGGACCATTGTGAAAATGAAACGGGATGACCTCAAAGCAACACT
CACAGCAAGGAATCGAGAAGCTAAGCAATTAACTCAGTTAGAAAGAACACGTCAGCGAAACCCATCTGAT
CGACATGTTATTTCACAGGCAGAAACGGAATTACAGAGAGCTGCAATGGATGCTAGCCGAACAAGTCGTC
ATCTGGAGGAAACTATTAACAACTTTGAAAGGCAGAAAATGAAGGATATAAAGACTATATTTTCTGAATT
TATCACAATCGAAATGTTATTTCACGGCAAAGCTTTAGAGGTCTACACTGCTGCCTACCAGAATATACAA
AACATTGATGAAGATGAAGATTTAGAGGTTTTCCGAAATTCTCTGTATGCACCAGATTATTCATCTCGTT
TAGATATTGTAAGAGCAAATTCAAAGTCACCTCTTCAGAGATCACTGTCAGCTAAGTGTGTATCTGGAAC
AGGACAGGTATCCACTTGTCGACTAAGAAAGGATCAACAAGCAGAAGATGATGAGGATGACGAGTTAGAT
GTTACAGAAGAAGAAAATTTTCTTAAGTAA

Translation (289 aa):
MMRRTLENRNAQTKQLQTAVSNVEKHFGELCQIFAAYVRKTARLRDKADLLVNEINAYAATETPHLKLGL
MNFADEFAKLQDYRQAEVERLEAKVVEPLKTYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQRNPSD
RHVISQAETELQRAAMDASRTSRHLEETINNFERQKMKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQ
NIDEDEDLEVFRNSLYAPDYSSRLDIVRANSKSPLQRSLSAKCVSGTGQVSTCRLRKDQQAEDDEDDELD
VTEEENFLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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