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Report for CCDS47904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47904.1 Public Homo sapiens 8 FBXO43 24 110 108 CCDS HistoryNCBI Gene:286151Re-query CCDS DB by CCDS ID:47904.1Re-query CCDS DB by GeneID:286151See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428847.3 ENSP00000403293.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428847.3Link to Ensembl Protein Viewer:ENSP00000403293.2Re-query CCDS DB by Nucleotide ID:ENST00000428847Re-query CCDS DB by Protein ID:ENSP00000403293
Original member Current member NCBI NM_001029860.4 NP_001025031.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029860.4Link to Protein Sequence:NP_001025031.2Re-query CCDS DB by Nucleotide ID:NM_001029860Re-query CCDS DB by Protein ID:NP_001025031Link to BLAST:NP_001025031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025031.2 708 Q4G163 708 100% 0 0

Chromosomal Locations for CCDS 47904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 100133802 100134050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100134161 100134364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100137565 100137667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100140683 100142168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100145051 100145135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGAGTTTTAAAGACAAAGATGAGAGAATTTCTTGTTTGGAAGCCTACGTAACTTTGACATCTAAGAGCT
CA
AGATTTACTGATGAAACAGAGATTTTGAAGATGTCGCAAAGGCACTCAGGTCAAGCTGGCACTGAAGC
A
GGAAATGGGGCGGACTCTCCTCCAATTGTCAACTCCAAGTACTCCACCTTCAGAGATTTTTGTTCCACA
TCT
TCATTTCAAGATAGTGGCTACAATGAGTTAAAATCTTGTAGCTTTGATAATATAGATAAAGAATATC
TT
GGAAAGAAAGAAAAAGGCCCAACATTACTCTATGAGCACCCTGAAACTTCAGGCCTGGGCTTAACACA
T
CCTTTAGAATCTCCCACTCAAAAAAAGAAATGTATCTTGCCTAGAAAGGAAAAGGATAAAACCCCAGAA
CTT
TGTGAAACACCTAAAATCAGTGGGAAAAAATGTTTACCTCGCAGAAGGTTGAATGTATCTTTCGCTC
TT
CTAAAAGGGGACTTTGAATCACAAAATAGTTCTTTAGAAAGTAGTATAAGCCAAGTTATCAACTTAGA
A
AAAAATATTCCAAGCAGTGCTTCAGGTTTTTCCAGGGCAAATAATTTTAGCCCTTTAGTTACTAGCACT
TTA
AAAACAGAAGAAGTGACTTCATGCAGTCAAAAATTGAGGCTTAATTTTTCTCAGCAAAAGACTTCCA
CA
ATTGATGATTCCAAAGATGATTGTAGCCTATTTGAAGTTGAATGTATATCTCCAATTCAGGGCAATAA
T
TTTAAAGACTCTATCACACATGACTTTAGTGATAGCAGTTTATGCATTAATGATGAGAATGCATGTCCA
GAG
CTCCTGGGCTCCTCTGTTAGTGGAACAACTTGTGGAACAGATGAGGACATATTTGTGACTCCGATAA
GT
AATCTTGTGGCAAACATTAGATTTAACGCAAGTCAAATACTTTCTCCTTCACCTGAAGTGAGAGGCAG
T
ATTTCAACGCCTGAAGACAGTGGTTTTAACTCACTTAGCTTGGAGAAATCAGAAGATTCCCTGTCTGAC
CAG
GAGGGTTCTTTTCAAGAACTACTGCAGAAACATAAGGGGACTCCCAAAGTTGGGGACACCATAAGAA
AG
ACAAGACATCTTGGAAGGTCGAGAAGACTGTCCACCCTTCGGGAACAAAGCTCGCAGTCAGAGACAGA
A
GAGGAAAAGCAGATTGTCCACCCTGACTCTGAAAAAAGAGCAGCAGCTGCTTCTGCCATCTCAGAGGGT
CAG
CTGAGTAGTGATGAGAGTGGGGATTTGACCTTTAGCTTAAAGAATTTATCAAAGACCCCAGCCTTGC
AA
TTGGTACATGAGCTGTTCATGAAAAGCAAGAGGAAAAGATTACAGGAAAATAGTGGACATGAATTCTT
A
GAGCAAGGGGATGGGGAGAAAATAGCTGTACTGCAGTGTATACTTGCAGGACTGATCGGCAAGAAAATG
GGT
ATAGAAAAACTGGACATCTTAACAGAATTAAAATATAGAAATTTAAAGCATATTCTTGCTATGGTTT
TA
GAGTCCTTGACCGCAGAGAGCCTATGCAGTGTTTGGAAAGTAAGCAGAAATTGGCGTGAAATTGTTGT
T
CAAGATAAAAATGCAAATCGGAGGAGGAAATTTTATATCACACAACTGAAAACAGATTCTGAGGGGGCT
GTA
TTAAATGTCGAGGATGCTGCCACTCGGCTCCAGCTTTTAAATCGCTCAGCTTTAAGATCTGTGCAGG
CA
CAGGCTAGGATACCTGGTTCTCAGAGAGAGCAAGGGTCAACATTATCTCCCTGGGGAGAAGTTTTGAC
A
CCTCTAGCAAGCTCTTCTGTTACTCACTTAAGTAGTAAACAGGAAGAATATGTTAAGGTTGCCAAAACA
CTT
TTTACTGATGAAGCATTAAAACCTTGCCCAAGGTGCCAGTCCCCTGCTAAGTACCAGCCATATAAGA
AA
AGGGGACTGTGTAGCCGAACAGCCTGTGGTTTTGACTTTTGTGTGTTATGTCTGTGTGCTTATCATGG
G
TCTGAAGAATGTAGTAGAGGAGCAGCAAAGCCAAGAAATAGAAAAGATGCTCTCCCAGGAAGTGCCCAG
AGT
AAGCGGAATTTAAAACGCCTCTGA


Translation (708 aa):
MSFKDKDERISCLEAYVTLTSKSSRFTDETEILKMSQRHSGQAGTEAGNGADSPPIVNSKYSTFRDFCST
S
SFQDSGYNELKSCSFDNIDKEYLGKKEKGPTLLYEHPETSGLGLTHPLESPTQKKKCILPRKEKDKTPE
L
CETPKISGKKCLPRRRLNVSFALLKGDFESQNSSLESSISQVINLEKNIPSSASGFSRANNFSPLVTST
L
KTEEVTSCSQKLRLNFSQQKTSTIDDSKDDCSLFEVECISPIQGNNFKDSITHDFSDSSLCINDENACP
E
LLGSSVSGTTCGTDEDIFVTPISNLVANIRFNASQILSPSPEVRGSISTPEDSGFNSLSLEKSEDSLSD
Q
EGSFQELLQKHKGTPKVGDTIRKTRHLGRSRRLSTLREQSSQSETEEEKQIVHPDSEKRAAAASAISEG
Q
LSSDESGDLTFSLKNLSKTPALQLVHELFMKSKRKRLQENSGHEFLEQGDGEKIAVLQCILAGLIGKKM
G
IEKLDILTELKYRNLKHILAMVLESLTAESLC
SVWKVSRNWREIVVQDKNANRRRKFYITQLKTDSEGA
V
LNVEDAATRLQLLNRSALRSVQAQARIPGSQREQGSTLSPWGEVLTPLASSSVTHLSSKQEEYVK
VAKT
L
FTDEALKPCPRCQSPAKYQPYKKRGLCSRTACGFDFCVLCLCAYHGSEECSRGAAKPRNRKDALPGSAQ
S
KRNLKRL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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