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Report for CCDS47985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47985.1 Public Homo sapiens 9 CEP78 24 110 108 CCDS HistoryNCBI Gene:84131Re-query CCDS DB by CCDS ID:47985.1Re-query CCDS DB by GeneID:84131See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415759.6 ENSP00000399286.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415759.6Link to Ensembl Protein Viewer:ENSP00000399286.2Re-query CCDS DB by Nucleotide ID:ENST00000415759Re-query CCDS DB by Protein ID:ENSP00000399286
Original member Current member EBI ENST00000642669.1 ENSP00000495681.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642669.1Link to Ensembl Protein Viewer:ENSP00000495681.1Re-query CCDS DB by Nucleotide ID:ENST00000642669Re-query CCDS DB by Protein ID:ENSP00000495681
Original member Current member NCBI NM_032171.3 NP_115547.1 Accepted alive Link to Nucleotide Sequence:NM_032171.3Link to Protein Sequence:NP_115547.1Re-query CCDS DB by Nucleotide ID:NM_032171Re-query CCDS DB by Protein ID:NP_115547Link to BLAST:NP_115547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115547.1 706 Q5JTW2-5 706 100% 0 0

Chromosomal Locations for CCDS 47985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 78236351 78236603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78240023 78240195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78240292 78240364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78241696 78241799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78243462 78243636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78246669 78246782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78248291 78248355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78248762 78248873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78251905 78252043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78253232 78253277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78254836 78254964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78262907 78262984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78264150 78264316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78265372 78265543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78266442 78266762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGATCGACTCCGTGAAGCTGCGCCGCGACAGCGCGGCGGACTTCTTCTCCCACTACGAGTACCTGTGCG
CGCTGCAGAACTCGGTGCCGCTGCCCGCCGTGCGCGCCTGTCTCCGGGAGGGCGTGCTGGATTTCAACGC
CGACCGCCTCCGCGGGGTGGACTGGGCGCCTCTGCTGAGCACCCTCAAGATCAATAAAGACCTGCCCTTG
GTCTCCATCAAGAGCTTCTTCCAGCCCTGGCTGGGGGACACAGGTTCTGACATGAATAAATTTTGCAGAA
GTCGTGTTCCTGCGATAAGATACAAAGATGTGACCTTCCAGTTGTGTAAAGCTCTTAAAGGCTGTTTAAG
TATATCAAGTGTGCTAAAGAACCTGGAGCTAAATGGACTAATTCTGAGAGAGAGGGATTTAACTATTCTA
GCAAAGGGATTGAATAAATCGGCTTCTTTGGTGCACCTGTCTCTTGCAAATTGTCCAATTGGAGATGGAG
GTTTAGAAATTATTTGTCAAGGTATAAAGAGCTCTATCACTCTTAAGACAGTCAACTTCACAGGATGTAA
TCTGACATGGCAGGGAGCAGATCACATGGCCAAGATCTTAAAGTATCAGACCATGAGAAGGCATGAAGAA
ACCTGGGCTGAGAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTGGCTTAAGACGTATCACAC
TGAATTGCAACACACTTATTGGTGACCTAGGTGCATGTGCTTTTGCAGACTCTCTCAGTGAGGATTTATG
GCTGAGAGCTCTTGACCTGCAACAGTGCGGCCTCACCAATGAAGGAGCAAAGGCTTTGCTAGAGGCCCTT
GAAACCAATACAACTCTGGTCGTTCTGGATATAAGAAAAAATCCACTCATTGATCATTCTATGATGAAAG
CAGTTATCAAAAAAGTCCTCCAGAATGGAAGGAGTGCCAAATCAGAGTACCAGTGGATAACTTCTCCATC
AGTGAAGGAACCATCCAAAACTGCTAAACAGAAAAGGAGAACTATAATTCTAGGAAGTGGTCACAAAGGA
AAAGCTACTATTAGAATTGTAGGATTGGCTACAAAGAAACCTGTAAGTAGTGGCAGAAAACACTCCCTTG
GTAAAGAATATTATGCGCCCGCACCTCTTCCACCTGGTGTGTCTGGTTTCTTGCCGTGGCGTACTGCAGA
ACGTGCAAAAAGACACAGGGGTTTCCCATTAATCAAAACACGTGATATATGTAATCAGTTGCAGCAACCA
GGTTTTCCTGTGACTGTGACAGTAGAGAGTCCTTCATCCTCTGAAGTTGAAGAGGTTGATGATTCTTCAG
AGAGTGTTCATGAAGTGCCTGAGAAAACTAGTATAGAACAAGAAGCATTACAGGAAAAACTGGAGGAGTG
CCTAAAGCAGTTAAAGGAAGAAAGAGTGATAAGGCTTAAGGTTGATAAACGAGTCAGTGAGCTGGAACAT
GAAAATGCCCAGTTAAGAAATATAAATTTCTCTTTGTCTGAAGCCCTTCATGCACAGTCATTGACAAATA
TGATCCTGGATGATGAAGGTGTTTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTCTTGGA
TCTCCTTAAAGATGCTGGGCTTGGGCAGCTTGCCACAATGGCTGGGATAGATCAGTCAGATTTTCAATTA
CTAGGTCATCCCCAGATGACTTCTACTGTTAGTAATCCACCTAAAGAAGAAAAGAAGGCGCTTGAAGATG
AAAAACCAGAACCGAAGCAGAATGCCCTAGGGCAAATGCAAAATATCCAGTTTCAGAAAATTACAGGTGA
TGCTAGAATTCCTTTGCCTCTCGACTCCTTTCCTGTCCCAGTTTCTACTCCAGAGGGCTTAGGAACTTCC
AGCAACAACCTAGGAGTCCCAGCTACTGAGCAGCGGCAGGAGTCTTTTGAAGGATTCATTGCTAGAATGT
GTTCTCCTTCACCAGATGCGACTTCTGGAACTGGAAGTCAAAGAAAAGAAGAGGAGTTGTCCAGAAATAG
CAGATCTTCTTCAGAGAAAAAGACCAAAACAGGTGAATATACCAAAAAACACTCTGATAAGCAACACCCT
GGAAAGGACCTGCATTCCTGA

Translation (706 aa):
MIDSVKLRRDSAADFFSHYEYLCALQNSVPLPAVRACLREGVLDFNADRLRGVDWAPLLSTLKINKDLPL
VSIKSFFQPWLGDTGSDMNKFCRSRVPAIRYKDVTFQLCKALKGCLSISSVLKNLELNGLILRERDLTIL
AKGLNKSASLVHLSLANCPIGDGGLEIICQGIKSSITLKTVNFTGCNLTWQGADHMAKILKYQTMRRHEE
TWAESLRYRRPDLDCMAGLRRITLNCNTLIGDLGACAFADSLSEDLWLRALDLQQCGLTNEGAKALLEAL
ETNTTLVVLDIRKNPLIDHSMMKAVIKKVLQNGRSAKSEYQWITSPSVKEPSKTAKQKRRTIILGSGHKG
KATIRIVGLATKKPVSSGRKHSLGKEYYAPAPLPPGVSGFLPWRTAERAKRHRGFPLIKTRDICNQLQQP
GFPVTVTVESPSSSEVEEVDDSSESVHEVPEKTSIEQEALQEKLEECLKQLKEERVIRLKVDKRVSELEH
ENAQLRNINFSLSEALHAQSLTNMILDDEGVLGSIENSFQKFHAFLDLLKDAGLGQLATMAGIDQSDFQL
LGHPQMTSTVSNPPKEEKKALEDEKPEPKQNALGQMQNIQFQKITGDARIPLPLDSFPVPVSTPEGLGTS
SNNLGVPATEQRQESFEGFIARMCSPSPDATSGTGSQRKEEELSRNSRSSSEKKTKTGEYTKKHSDKQHP
GKDLHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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