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Report for CCDS48056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48056.1 Public Homo sapiens 9 GPSM1 24 110 108 CCDS HistoryNCBI Gene:26086Re-query CCDS DB by CCDS ID:48056.1Re-query CCDS DB by GeneID:26086See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291775.3 ENSP00000291775.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000291775.3Link to Ensembl Protein Viewer:ENSP00000291775.3Re-query CCDS DB by Nucleotide ID:ENST00000291775Re-query CCDS DB by Protein ID:ENSP00000291775
Original member Current member EBI ENST00000392944.5 ENSP00000376673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392944.5Link to Ensembl Protein Viewer:ENSP00000376673.1Re-query CCDS DB by Nucleotide ID:ENST00000392944Re-query CCDS DB by Protein ID:ENSP00000376673
Original member Current member EBI ENST00000429455.5 ENSP00000390705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429455.5Link to Ensembl Protein Viewer:ENSP00000390705.1Re-query CCDS DB by Nucleotide ID:ENST00000429455Re-query CCDS DB by Protein ID:ENSP00000390705
Original member Current member NCBI NM_001145639.2 NP_001139111.1 Accepted alive Link to Nucleotide Sequence:NM_001145639.2Link to Protein Sequence:NP_001139111.1Re-query CCDS DB by Nucleotide ID:NM_001145639Re-query CCDS DB by Protein ID:NP_001139111Link to BLAST:NP_001139111.1
Original member Current member NCBI NM_001200003.2 NP_001186932.1 Accepted alive Link to Nucleotide Sequence:NM_001200003.2Link to Protein Sequence:NP_001186932.1Re-query CCDS DB by Nucleotide ID:NM_001200003Re-query CCDS DB by Protein ID:NP_001186932Link to BLAST:NP_001186932.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139111.1 166 Q86YR5-2 166 100% 0 0
NP_001186932.1 166 Q86YR5-2 166 100% 0 0

Chromosomal Locations for CCDS 48056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136355762 136355846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136356342 136356550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136358014 136358220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGACGACCAGCGTTGTCCCCTGGACGATGGCCAGGCCGGGGCTGCCGAGGCCACGGCCGCCCCCACCC
TGGAGGACAGGATCGCCCAGCCCTCGATGACGGCCTCGCCCCAGACCGAGGAATTCTTCGACCTCATCGC
CAGCTCCCAGAGCCGCCGGCTGGACGACCAGCGGGCCAGCGTGGGCAGCCTGCCGGGGCTGCGAATCACC
CACAGCAATGCAGGGCACCTCCGAGGCCACGGCGAGCCCCAGGAGCCGGGGGACGACTTCTTCAACATGC
TCATCAAGTACCAGTCCTCCAGGATCGATGACCAGCGCTGCCCGCCACCTGACGTACTGCCCCGGGGCCC
TACCATGCCGGACGAGGACTTCTTCAGCCTCATTCAGAGGGTGCAGGCTAAGCGCATGGACGAGCAGCGG
GTGGACCTCGCCGGGGGCCCGGAGCAGGGGGCAGGCGGCCCGCCCGAGCCCCAGCAGCAGTGCCAGCCTG
GTGCGAGCTAA

Translation (166 aa):
MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGSLPGLRIT
HSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQR
VDLAGGPEQGAGGPPEPQQQCQPGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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