NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS48170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48170.1 Public Homo sapiens X HS6ST2 24 110 108 CCDS HistoryNCBI Gene:90161Re-query CCDS DB by CCDS ID:48170.1Re-query CCDS DB by GeneID:90161See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370833.7 ENSP00000359870.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370833.7Link to Ensembl Protein Viewer:ENSP00000359870.3Re-query CCDS DB by Nucleotide ID:ENST00000370833Re-query CCDS DB by Protein ID:ENSP00000359870
Original member Current member EBI ENST00000521489.5 ENSP00000429473.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521489.5Link to Ensembl Protein Viewer:ENSP00000429473.1Re-query CCDS DB by Nucleotide ID:ENST00000521489Re-query CCDS DB by Protein ID:ENSP00000429473
Original member Current member NCBI NM_001077188.2 NP_001070656.1 Accepted alive Link to Nucleotide Sequence:NM_001077188.2Link to Protein Sequence:NP_001070656.1Re-query CCDS DB by Nucleotide ID:NM_001077188Re-query CCDS DB by Protein ID:NP_001070656Link to BLAST:NP_001070656.1
Original member Current member NCBI NM_001394073.1 NP_001381002.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394073.1Link to Protein Sequence:NP_001381002.1Re-query CCDS DB by Nucleotide ID:NM_001394073Re-query CCDS DB by Protein ID:NP_001381002Link to BLAST:NP_001381002.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070656.1 645 Q96MM7-4 645 100% 0 0
NP_001381002.1 645 Q96MM7-4 645 100% 0 0

Chromosomal Locations for CCDS 48170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 132628223 132629093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132669113 132669199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132708462 132708494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132956808 132957326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132958175 132958602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGCACTGCCTGCGTGTGCAGTCCGGGAGTTCGAGCCGCCGCGGCAACCGGAGCGAGGAGCGCCCGTCC
GCACCACCTGTCCCCGCCGGCATTCCAGAGTAGAGGCCGAATTGGCAGCGAGCCGGCCCGGGTCGGTCGC
CGCCTCAGTTCGCGCGGGCCCTCCTAGGGGTGTGTCTCACGGATTCCACACCCGGCCGCTCCTGGACAAG
CCCCGAAAGGCGTCTTCTTCCCTGGCGGGAGCCGCGTGCGCCCCGCTTTTCGCGCTGCTGTCCCGGGGCC
GCCGCAGGCGGATGCACGTCCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCG
GGGCCTGGCCGCCCTGGGCCACTCGCTGAAGCACGTGCTCGGTGCGATCTTCTCCAAGATTTTCGGCCCC
ATGGCCAGCGTCGGGAACATGGATGAGAAATCCAACAAGCTGCTGCTAGCTTTGGTGATGCTCTTCCTAT
TTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGCAGGCGTTCAG
CTCCCCGGTGCCGGACCCGTACCGCTCGGAGGATGAGAGCTCCGCCAGGTTCGTGCCCCGCTACAATTTC
ACCCGCGGCGACCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGATGACCTGATCGTGTTCCTGCACA
TCCAGAAGACCGGGGGCACCACTTTCGGCCGCCACTTGGTGCGTAACATCCAGCTGGAGCAGCCGTGCGA
GTGCCGCGTGGGTCAGAAGAAATGCACTTGCCACCGGCCGGGTAAGCGGGAAACCTGGCTCTTCTCCAGG
TTCTCCACGGGCTGGAGCTGCGGGTTGCACGCCGACTGGACCGAGCTCACCAGCTGTGTGCCCTCCGTGG
TGGACGGCAAGCGCGACGCCAGGCTGAGACCGTCCAGGTGGAGGATTTTTCAGATTCTAGATGCAGCAAG
TAAGGATAAACGGGGTTCTCCAAACACTAACGCAGGCGCCAACTCTCCGTCATCCACAAAGACCCGGAAC
ACATCTAAGAGTGGGAAGAACTTCCACTACATCACCATCCTCCGAGACCCAGTGTCCCGGTACTTGAGTG
AGTGGAGGCATGTCCAGAGAGGGGCAACATGGAAAGCATCCCTGCATGTCTGCGATGGAAGGCCTCCAAC
CTCCGAAGAGCTGCCCAGCTGCTACACTGGCGATGACTGGTCTGGCTGCCCCCTCAAAGAGTTTATGGAC
TGTCCCTACAATCTAGCCAACAACCGCCAGGTGCGCATGCTCTCCGACCTGACCCTGGTAGGCTGCTACA
ACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAGGTCCTTCTGGAAAGTGCCAAGTCAAATCTGAAGCA
CATGGCGTTCTTCGGCCTCACTGAGTTTCAGCGGAAGACCCAATATCTGTTTGAGAAAACCTTCAACATG
AACTTTATTTCGCCATTTACCCAGTATAATACCACTAGGGCCTCTAGTGTAGAGATCAATGAGGAAATTC
AAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGTTGTACAGCTATGCCAAAGACCTTTTTTTGCA
GAGGTATCAGTTTATGAGGCAGAAAGAGCATCAGGAGGCCAGGCGAAAGCGTCAGGAACAACGCAAATTT
CTGAAGGGAAGGCTCCTTCAGACCCATTTCCAGAGCCAGGGTCAGGGCCAGAGCCAGAATCCGAATCAGA
ATCAGAGTCAGAACCCAAATCCGAATGCCAATCAGAACCTGACTCAGAATCTGATGCAGAATCTGACTCA
GAGTTTGAGCCAGAAGGAGAACCGGGAAAGCCCGAAGCAGAACTCAGGCAAGGAGCAGAATGATAACACC
AGCAATGGCACCAACGACTACATAGGCAGTGTAGAGAAATGGCGTTAA

Translation (645 aa):
MALPACAVREFEPPRQPERGAPVRTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSHGFHTRPLLDK
PRKASSSLAGAACAPLFALLSRGRRRRMHVLRRRWDLGSLCRALLTRGLAALGHSLKHVLGAIFSKIFGP
MASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPDPYRSEDESSARFVPRYNF
TRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRETWLFSR
FSTGWSCGLHADWTELTSCVPSVVDGKRDARLRPSRWRIFQILDAASKDKRGSPNTNAGANSPSSTKTRN
TSKSGKNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMD
CPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNM
NFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQEARRKRQEQRKF
LKGRLLQTHFQSQGQGQSQNPNQNQSQNPNPNANQNLTQNLMQNLTQSLSQKENRESPKQNSGKEQNDNT
SNGTNDYIGSVEKWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH