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Report for CCDS48218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48218.1 Public Mus musculus 1 A830018L16Rik 23 108 98 CCDS HistoryNCBI Gene:320492Re-query CCDS DB by CCDS ID:48218.1Re-query CCDS DB by GeneID:320492See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171690.8 ENSMUSP00000132334.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171690.8Link to Ensembl Protein Viewer:ENSMUSP00000132334.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171690Re-query CCDS DB by Protein ID:ENSMUSP00000132334
Original member Current member NCBI NM_001160371.2 NP_001153843.1 Accepted alive Link to Nucleotide Sequence:NM_001160371.2Link to Protein Sequence:NP_001153843.1Re-query CCDS DB by Nucleotide ID:NM_001160371Re-query CCDS DB by Protein ID:NP_001153843Link to BLAST:NP_001153843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153843.1 288 Q8BZJ8-4 288 100% 0 0

Chromosomal Locations for CCDS 48218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11414569 11414637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11511918 11512065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11518578 11518709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11545154 11545282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11562963 11562991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11588374 11588546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11596151 11596317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11596965 11596984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCATCTCGTCAACAAACCCGAATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCTCTGTTTGAGG
AATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGACCATCTTCAATC
TAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCAGCTCTCTGGGCAGAAAGTGAA
TCATCAGAACCCAAAGGAACGAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAAAGA
AGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAGACTCCAAATCATT
GCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATTTTGATGAATTG
AACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATCTCTCTCGAAGTATCGCGATTT
CAGATGAACTTGATAAGGAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTG
GATCGGCAGGGCAGAAAATGATGCTGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGGAGT
AAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCCAGTCCAGCAGGAAGCTTAAAGATGGAGCCCAAGA
CGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACTCCTGGCTGCAATGCTTTCCCAGGACTCCTT
CGAGTCCATCCATAGCCCCACACCATCTGTAATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAG
TTGCTGGAACAGATTTTCTCTGTGTAG

Translation (288 aa):
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALSGSAALWAESE
SSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDEL
NHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRS
KNDSWESEDSSSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAME
LLEQIFSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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