CCDS Report for Consensus CDS

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Report for CCDS48230.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
48230.1	Public	Mus musculus	1	Kcnq5	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48230.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000115300.7	ENSMUSP00000110955.1	Accepted	alive
		NCBI	NM_001160139.1	NP_001153611.1	Accepted	alive

Chromosomal Locations for CCDS 48230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)

Genome Browser links:

Chromosome	Start	Stop
1	21402163	21403125
1	21404932	21405058
1	21405793	21405924
1	21424049	21424157
1	21457404	21457624
1	21461551	21461607
1	21466383	21466409
1	21469470	21469564
1	21479374	21479469
1	21487223	21487333
1	21505300	21505425
1	21505684	21505859
1	21535061	21535187
1	21593524	21593614
1	21961181	21961581

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2859 nt):
ATGCCCCGCCACCACGCGGGAGGAGAGGAGGGCGGTGCCGCCGGGCTCTGGGTGAGGAGCGGCGCGGCGG CGGCGGCAGGCGCGGGTGGGGGGCGCCCGGGCAGCGGCATGAAGGATGTGGAGTCCGGCCGCGGCAGGGT GCTGCTGAACTCGGCGGCCGCCAGGGGCGACGGCCTGCTGTTGCTCGGCACCCGCGCGGCGGCGCTCGGC GGAGGCGGCGGCGGCTTGAGAGAGAGCCGCCGGGGCAAGCAGGGGGCCCGAATGAGCCTGCTGGGGAAGC CGCTCTCCTACACCAGCAGCCAGAGCTGTCGGCGCAACGTCAAGTACCGGCGGGTGCAGAACTATCTGTA CAACGTGCTGGAGCGACCCCGCGGCTGGGCGTTCGTCTACCACGCGTTCGTTTTTCTCCTTGTGTTTGGT TGCTTGATTTTGTCAGTGTTTTCTACCATCCCTGAGCATACAAAATTGGCTTCAAGTTGCCTCTTAATTC TGGAGTTCGTGATGATCGTTGTCTTTGGCTTGGAGTTCATCATTCGAATCTGGTCTGCAGGTTGCTGTTG TCGTTATAGAGGATGGCAAGGAAGACTGAGGTTTGCTCGAAAACCATTCTGTGTAATAGATACCATTGTT CTCATCGCTTCAATAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTTTCGCCACGTCAGCGCTCAGAA GTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGGACAGAAGGGGAGGGACCTGGAAGCTGCTCGG CTCTGTGGTTTATGCTCACAGCAAGGAATTAATCACAGCCTGGTACATTGGATTTCTGGTTCTTATTTTT TCATCCTTCCTTGTCTATCTTGTGGAAAAGGATGCCAATAAAGAGTTTTCGACATATGCGGATGCTCTCT GGTGGGGCACAATCACACTGACAACCATTGGCTATGGAGACAAAACACCCCTAACGTGGCTGGGAAGACT GCTCTCTGCAGGCTTCGCACTCCTTGGCATTTCTTTCTTTGCACTTCCTGCTGGCATTCTTGGCTCAGGT TTTGCATTAAAAGTACAGGAGCAGCACCGCCAGAAGCATTTTGAGAAAAGAAGGAACCCAGCTGCCAACC TCATCCAGTGTGTCTGGCGTAGTTATGCAGCTGATGAAAAATCTGTTTCCATTGCAACCTGGAAGCCACA TCTGAAGGCCTTGCACACCTGCAGCCCTACCAAGAAAGAACAAGGGGAGGCATCAAGCAGTAAGTTCTGT AGTAATAAGCAGAAGTTCTTCAGAGTGTACACCTCACGGAAGCAGAGTCAGAAGCTGAGCTTTAAGGAGC GAGTGCGCATGGCTAGCCCAAGGGGCCAGAGCATTAAGAGCAGACAAGCATCAGTAGGTGACAGGAGATC CCCGAGCACTGACATCACTGCCGAGGGCAGCCCCACCAAAGTCCAGAAGAGTTGGAGCTTCAACGACCGA ACCCGCTTCAGGCCCTCACTACGGCTCAAGAGTTCCCAGCCAAAGCCAGTGATAGACGCCGACACAGCCC TTGGCATTGATGATGTGTATGATGAGAAAGGATGCCAGTGTGACGTCTCTGTGGAGGACCTCACCCCACC ACTTAAAACCGTCATCCGAGCAATCAGAATTATGAAGTTTCATGTTGCAAAGCGGAAGTTTAAGGAAACA TTACGCCCATATGATGTAAAAGATGTCATTGAACAATACTCTGCTGGTCACCTGGACATGCTTTGTAGAA TAAAAAGCCTTCAGACACGCGTTGATCAAATTCTTGGAAAAGGACAAATGACGTCAGATAAGAAGAGCCG AGAGAAAATAACAGCAGAACACGAGACAACAGATGACCCCAGCATGCTCGCCCGGGTTGTGAAGGTTGAG AAACAGGTCCAGTCCATCGAATCCAAGCTGGACTGCCTGCTGGATATCTATCAACAGGTCCTCCGGAAAG GCTCTGCCTCCGCCCTCACTCTGGCATCCTTTCAGATCCCGCCTTTTGAATGTGAACAGACCTCTGACTA TCAAAGTCCTGTGGATAGCAAAGACCTGTCTGGCTCAGCACAAAACAGCGGCTGTTTAACGAGGTCAGCC AGTGCCAACATCTCAAGAGGCCTGCAGTTCATCCTAACACCAAATGAGTTCAGTGCTCAGACTTTCTATG CGCTTAGCCCTACTATGCACAGCCAAGCTACCCAGGTACCCATGAGTCAAAATGACGGCTCCTCCGTGGT AGCCACCAATAACATTGCAAACCAAATAAGCGCCGCACCCAAGCCAGCAGCCCCAACAACTTTACAGATC CCTCCTCCTCTCTCGGCCATCAAGCACTTGTCCAGGCCAGAACCTCTGCTCTCAAACCCCACCGGCTTAC AAGAGAGTATTTCTGATGTCACCACCTGCCTTGTTGCCTCCAAGGAAAGTGTTCAGTTTGCACAGTCAAA CCTGACCAAGGACCGTTCCCTGAGGAAAAGTTTCGACATGGGAGGAGAAACTCTGTTGTCTGTCCGCCCC ATGGTGCCCAAGGATTTGGGCAAATCTCTGTCTGTACAAAACCTGATCAGGTCGACAGAAGAACTGAACT TACAGTTTTCAGGCAGCGAGTCAAGCGGCTCTCGAGGCAGTCAAGATTTTTATCCCAAGTGGAGAGAATC CAAATTGTTTATAACTGATGAGGAGGTCGGTGCCGAAGAGACAGAAACAGATACTTTTGACGGCACCCCA CCGCCTGCGGGGGAGGCTGCTTTCTCATCAGACTCTCTAAGGACTGGAAGGTCACGGTCATCTCAGAACA TTTGTAAGACAGGAGACAGTACAGACGCCCTCAGTTTGCCTCACGTCAAACTGAACTAA
Translation (952 aa):
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLLLLGTRAAALG GGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVLERPRGWAFVYHAFVFLLVFG CLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIV LIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIF SSFLVYLVEKDANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSG FALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSSKFC SNKQKFFRVYTSRKQSQKLSFKERVRMASPRGQSIKSRQASVGDRRSPSTDITAEGSPTKVQKSWSFNDR TRFRPSLRLKSSQPKPVIDADTALGIDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKET LRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQMTSDKKSREKITAEHETTDDPSMLARVVKVE KQVQSIESKLDCLLDIYQQVLRKGSASALTLASFQIPPFECEQTSDYQSPVDSKDLSGSAQNSGCLTRSA SANISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQI PPPLSAIKHLSRPEPLLSNPTGLQESISDVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRP MVPKDLGKSLSVQNLIRSTEELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGTP PPAGEAAFSSDSLRTGRSRSSQNICKTGDSTDALSLPHVKLN

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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