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Report for CCDS48237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48237.1 Public Mus musculus 1 Hs6st1 23 108 98 CCDS HistoryNCBI Gene:50785Re-query CCDS DB by CCDS ID:48237.1Re-query CCDS DB by GeneID:50785See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088174.3 ENSMUSP00000085499.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088174.3Link to Ensembl Protein Viewer:ENSMUSP00000085499.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088174Re-query CCDS DB by Protein ID:ENSMUSP00000085499
Original member Current member NCBI NM_015818.2 NP_056633.2 Accepted alive Link to Nucleotide Sequence:NM_015818.2Link to Protein Sequence:NP_056633.2Re-query CCDS DB by Nucleotide ID:NM_015818Re-query CCDS DB by Protein ID:NP_056633Link to BLAST:NP_056633.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056633.2 411 Q9QYK5 411 100% 0 0

Chromosomal Locations for CCDS 48237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36068658 36069184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36103513 36104221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCGGCGGCGGCGCGCCGGCGGCAGGACCATGGTTGAGCGCGCCAGCAAGTTCGTGCTGGTGGTGGCGG
GCTCGGCGTGCTTCATGCTCATCCTTTACCAGTACGCGGGCCCGGGGCTGAGTCTGGGCGCGCCCGGTGG
CCGCGTGCCCCCCGACGACCTGGATCTCTTCCCCACGCCGGACCCACATTACGAGAAAAAGTACTACTTC
CCGGTGCGCGAGCTGGAGCGCTCGCTGCGCTTCGACATGAAGGGCGACGACGTGATCGTCTTCCTGCACA
TCCAGAAGACCGGCGGCACCACCTTCGGCCGCCACCTAGTGCAGAACGTGCGCCTCGAGGTGCCCTGCGA
CTGTCGCCCGGGCCAGAAGAAGTGCACCTGCTATCGGCCCAATCGCCGCGAGACCTGGCTCTTCTCTCGC
TTCTCCACGGGCTGGAGCTGCGGGCTGCACGCTGACTGGACCGAACTCACCAACTGTGTGCCCGGTGTGC
TAGACCGCCGCGACCCAGCAGGTCTGCGTTCGCCCAGAAAGTTCTACTACATCACCCTGCTGCGAGACCC
CGTATCCCGCTACCTGAGTGAATGGCGACATGTACAGCGTGGGGCCACGTGGAAGACCTCCTTGCACATG
TGTGACGGGCGCACACCGACCCCAGAGGAGCTGCCGCCCTGCTACGAGGGCACAGACTGGTCGGGCTGCA
CGTTGCAGGAGTTCATGGATTGCCCCTATAACCTGGCTAACAACCGGCAGGTGCGCATGCTGGCCGACCT
CAGCCTGGTGGGCTGCTACAACCTATCTTTCATCCCCGAGAGCAAGCGGGCCCAGTTGCTGCTGGAGAGC
GCCAAGAAGAACCTGCGAGGCATGGCCTTCTTCGGCCTCACTGAGTTCCAGCGCAAGACGCAGTACCTAT
TTGAGCGGACGTTCAACCTCAAGTTCATCCGGCCATTCATGCAATACAACAGCACGCGGGCGGGCGGTGT
GGAGGTGGATGAGGACACTATCCGCCACATCGAGGAGCTCAACGACCTGGACATGCAGCTGTATGACTAT
GCCAAGGACCTCTTTCAGCAGCGTTACCAGTACAAGAGACAGCTGGAGCGCAGGGAACAGCGCCTGCGCA
ATCGCGAAGAGCGCCTCCTGCACCGCTCCAAGGAAGCGCTGCCACGGGAGGACCCAGAAGAGCCGGGCCG
TGTGCCCACCGAGGACTACATGAGCCATATCATTGAGAAGTGGTAG

Translation (411 aa):
MRRRRAGGRTMVERASKFVLVVAGSACFMLILYQYAGPGLSLGAPGGRVPPDDLDLFPTPDPHYEKKYYF
PVRELERSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNRRETWLFSR
FSTGWSCGLHADWTELTNCVPGVLDRRDPAGLRSPRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHM
CDGRTPTPEELPPCYEGTDWSGCTLQEFMDCPYNLANNRQVRMLADLSLVGCYNLSFIPESKRAQLLLES
AKKNLRGMAFFGLTEFQRKTQYLFERTFNLKFIRPFMQYNSTRAGGVEVDEDTIRHIEELNDLDMQLYDY
AKDLFQQRYQYKRQLERREQRLRNREERLLHRSKEALPREDPEEPGRVPTEDYMSHIIEKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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