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Report for CCDS48257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48257.1 Public Mus musculus 1 Nemp2 23 108 98 CCDS HistoryNCBI Gene:227094Re-query CCDS DB by CCDS ID:48257.1Re-query CCDS DB by GeneID:227094See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165859.7 ENSMUSP00000129351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165859.7Link to Ensembl Protein Viewer:ENSMUSP00000129351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165859Re-query CCDS DB by Protein ID:ENSMUSP00000129351
Original member Current member NCBI NM_001142647.1 NP_001136119.1 Accepted alive Link to Nucleotide Sequence:NM_001142647.1Link to Protein Sequence:NP_001136119.1Re-query CCDS DB by Nucleotide ID:NM_001142647Re-query CCDS DB by Protein ID:NP_001136119Link to BLAST:NP_001136119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136119.1 421 Q8CB65-1 421 100% 0 0

Chromosomal Locations for CCDS 48257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52630758 52630851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52637365 52637480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52640829 52641060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52641171 52641243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52642319 52642412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52643122 52643236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52645261 52645486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52648750 52648926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52649706 52649844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGCTGCCTAGGTTGTGGTGGCTGGTGCTCTGGCTGCAGCCCCTGGCTACACTGCCAGCGAGCGCGGTGC
ACGACGAGGAGGCAGCGATGTCAGTTCCCAGATGTAAATCTCTGAAGGAAACGGACTTAATTAAAACTTC
TGTGTCAGACTGCTATTGCTACAATCAACATTCGCAAATCCAGTGGACATATATGTGGTCAACTGTGCAG
GTGACAGTAACCAGCCCGGGCCTGCTCAATATTGTATATATCACAGGAAGTCATAACTGCCAGCACACAG
AAAGCATTTTATCATTTATCAAATGTGTGACTCATAACTTTTGGGCACCAGAGGAGGCTGAGGAGATAAC
CATAGTCTTCAGTCCATATGGAGAAACTGTGTGCTTCTCTGTGAAGCCTGTTGGGAGGCTCCTTCCCTAC
ATAGTAAGCGTGAGTCGAAACATTGTGGATTTCAAACTCTTCCTTGTGTTTGTGACAGGCATTTTCCTTT
TCTTGTATGCAAAGACCTTGAGCCAAAGCCCTGTTTTCTATTACTCTTCCGGTACCGTGTTAGGTATTCT
AATGACATTAGTCTTTGTCCTTCTGATGGCTAAGAAACACATTCCAAAGTATAGCACATTTGGGGCGCTA
ATGATTGGTTGTTGGTTTGCTTCAGTTTATGTTTTGTGCCAGTTGATGGAAGATCTGAAGTGGCTGTGGT
ATGGAAACAGAATGTATATATTAGGCTATGTGGTGGTTGTTGGACTTTGTAGCTTTGCTGCCTGTTACAG
TCACGGGCCTCTTGCTGATGAGGGGAGCAGAGACCTTCTCATGTGGACCCTGAGGCTCTTCTCCCTGGCT
CTGGTCTACACTGGTGTGGCCGCTCCTCAGTTTGCCTATGCTGTTCTGATCGTCCTCTTGTTCTCCTGGA
GTCTGCACTATCTCCTGAGAGCATTCAGCTATCTCAGGTGGAAAATGAGGCCGTGGTTCACAGCAGAACC
TCAGGTGGCGAGGTATCTCACTGATGACGAGTACAGGGAGCAAGCTGAAGCTGCAACAGCCAGGGCTCTC
GAGGAACTGCGCCAAGCCTGCTGCAGGCCTGACTTCCCTTCCTGGCTGGCTGTCTCCAGACTCCAGGCTC
CTAAAAAGTTTGCAGAGTTTGTTCTTGGAGCCAGCCACCTGTCACCAGAGGAAGTCAGCACACATGAAAA
GCAGTATGGCCTTGGGGGTGCCTTCCTGGAGGAACAGCTCTTTAGCCTGCAGACTGACAGTCTACCTGCA
AGTTGA

Translation (421 aa):
MLPRLWWLVLWLQPLATLPASAVHDEEAAMSVPRCKSLKETDLIKTSVSDCYCYNQHSQIQWTYMWSTVQ
VTVTSPGLLNIVYITGSHNCQHTESILSFIKCVTHNFWAPEEAEEITIVFSPYGETVCFSVKPVGRLLPY
IVSVSRNIVDFKLFLVFVTGIFLFLYAKTLSQSPVFYYSSGTVLGILMTLVFVLLMAKKHIPKYSTFGAL
MIGCWFASVYVLCQLMEDLKWLWYGNRMYILGYVVVVGLCSFAACYSHGPLADEGSRDLLMWTLRLFSLA
LVYTGVAAPQFAYAVLIVLLFSWSLHYLLRAFSYLRWKMRPWFTAEPQVARYLTDDEYREQAEAATARAL
EELRQACCRPDFPSWLAVSRLQAPKKFAEFVLGASHLSPEEVSTHEKQYGLGGAFLEEQLFSLQTDSLPA
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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