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Report for CCDS48306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48306.1 Public Mus musculus 1 Ngef 23 108 98 CCDS HistoryNCBI Gene:53972Re-query CCDS DB by CCDS ID:48306.1Re-query CCDS DB by GeneID:53972See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027477.14 ENSMUSP00000027477.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027477.14Link to Ensembl Protein Viewer:ENSMUSP00000027477.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027477Re-query CCDS DB by Protein ID:ENSMUSP00000027477
Original member Current member NCBI NM_019867.2 NP_063920.2 Accepted alive Link to Nucleotide Sequence:NM_019867.2Link to Protein Sequence:NP_063920.2Re-query CCDS DB by Nucleotide ID:NM_019867Re-query CCDS DB by Protein ID:NP_063920Link to BLAST:NP_063920.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063920.2 620 Q8CHT1-2 620 100% 0 0

Chromosomal Locations for CCDS 48306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87477554 87477744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87479103 87479207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87479837 87479916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87480587 87480742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87481116 87481279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87482623 87482712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87484599 87484673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87486156 87486285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87487799 87487951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87489584 87489744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87503266 87503573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87509245 87509387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87510093 87510199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGAGCTGCTGGCTGCAGCCTTCAGCGCCGCCTGCGCCGTGGACCACGACAGCTCCACCTCGGAGAGCG
ACACGCGCGACTCGGCGGCGGGACACCTGCCGGGCAGCGAGTCATCCTCCACCCCTGGAAATGGAACCAC
ACCCGAGGAGTGCCCAGCCCTCACCGACAGCCCCACCACTCTCACGGAGGCCCTGCAGATGATCCATCCC
ATTCCCGCCGACTCCTGGAGAAACCTCATTGAACAAATAGGGCTCCTGTATCAAGAGTATAGAGACAAAT
CGACTCTCCAAGAAATTGAAACACGGAGGCAGCAGGATGCAGAAATCCAAGGCAACTCCGATGGGTCCCA
GGTTGGGGAAGACGCTGGAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGGAGGAGCTGGCCAGCCCT
CCTGAGAGGAGAGCTCTGCCTCAGATCTGCCTGCTCAGCAACCCCCACTCCAGGTTCAACCTCTGGCAAG
ACCTTCCTGAGATCCAGAGCAGTGGCGTGCTGGACATTCTCCAGCCGGAGGAGATCAGGCTGCAGGAGGC
CATGTTTGAGTTGGTTACCTCTGAGGCCTCCTACTATAAGAGCCTGAACCTGCTGGTGTCGCACTTCATG
GAGAACGAGCGTCTGAAGAAGATCCTGCATCCATCTGAGGCCCACATCCTCTTTTCCAATGTCCTGGATG
TCATGGCTGTCAGTGAGCGGTTTTTGCTGGAGCTAGAGCACCGCATGGAGGAGAACATTGTTATCTCGGA
TGTGTGCGACATCGTGTACCGTTACGCAGCTGATCACTTCTCGGTCTATATCACTTACGTCAGTAACCAG
ACCTACCAGGAAAGGACATACAAGCAGCTCCTACAGGAGAAGGCCGCTTTCCGGGAACTGATCGCACAGT
TGGAGCTGGACCCCAAATGCAAGGGCCTGCCTTTCTCCTCCTTCCTCATCTTGCCTTTCCAGAGGATCAC
GAGACTCAAGCTGCTGGTCCAGAATATCCTGAAGAGAGTGGAGGAGAGGTCTGAACGTGAAGGCACCGCC
TTGGATGCCCACAAGGAGCTAGAAATGGTGGTAAAGGCATGCAATGAGGGTGTCCGGAAGATGAGCCGCA
CAGAACAGATGATCAGCATTCAGAAGAAGATGGAGTTCAAGATCAAGTCGGTACCCATCATCTCACACTC
CCGGTGGCTGCTGAAGCAGGGTGAGCTGCAGCAGATGTCCGGCCCCAAGACCTCCCGCACCCTGCGGACC
AAGAAGCTCTTCAGAGAAATTTACCTCTTCCTCTTCAATGACCTGCTGGTGATCTGCCGGCAGATCCCTG
GAGACAAGTACCAGGTGTTTGATTCGGCCCCAAGGGGCCTGCTTCGAGTGGAGGAGCTGGAGGACCAGGG
TCAAACACTGGCTAATGTGTTCATCCTGCGGCTGCTGGAAAATGCAGATGACCGAGAGGCCACCTATATG
CTGAAGGCATCCTCCCAGAGCGAGATGAAGCGCTGGATGACCTCACTGGCCCCCAACAGGAGGACCAAGT
TTGTATCCTTCACATCTCGGCTGTTGGACTGTCCCCAGGTCCAGTGTGTGCACCCGTATGTGGCCCAGCA
GCCTGATGAACTGACGCTGGAACTGGCAGATATCCTGAACATCCTGGAGAAGACAGAGGATGGGTGGATC
TTTGGTGAGCGGCTGCATGACCAGGAGAGAGGCTGGTTCCCCAGTTCCATGACAGAGGAGATCCTGAACC
CCAAGATCCGCTCCCAGAACCTCAAGGAATGTTTCCGGGTACATAAGATGGAAGACCCTCAGCGCAGCCA
GAATAAGGACCGCAGGAAGCTGGGCAGCCGGAATCGTCAATGA

Translation (620 aa):
MELLAAAFSAACAVDHDSSTSESDTRDSAAGHLPGSESSSTPGNGTTPEECPALTDSPTTLTEALQMIHP
IPADSWRNLIEQIGLLYQEYRDKSTLQEIETRRQQDAEIQGNSDGSQVGEDAGEEEEEEEEGEEEELASP
PERRALPQICLLSNPHSRFNLWQDLPEIQSSGVLDILQPEEIRLQEAMFELVTSEASYYKSLNLLVSHFM
ENERLKKILHPSEAHILFSNVLDVMAVSERFLLELEHRMEENIVISDVCDIVYRYAADHFSVYITYVSNQ
TYQERTYKQLLQEKAAFRELIAQLELDPKCKGLPFSSFLILPFQRITRLKLLVQNILKRVEERSEREGTA
LDAHKELEMVVKACNEGVRKMSRTEQMISIQKKMEFKIKSVPIISHSRWLLKQGELQQMSGPKTSRTLRT
KKLFREIYLFLFNDLLVICRQIPGDKYQVFDSAPRGLLRVEELEDQGQTLANVFILRLLENADDREATYM
LKASSQSEMKRWMTSLAPNRRTKFVSFTSRLLDCPQVQCVHPYVAQQPDELTLELADILNILEKTEDGWI
FGERLHDQERGWFPSSMTEEILNPKIRSQNLKECFRVHKMEDPQRSQNKDRRKLGSRNRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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