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Report for CCDS48313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48313.1 Public Mus musculus 1 Ugt1a6b 23 108 98 CCDS HistoryNCBI Gene:394435Re-query CCDS DB by CCDS ID:48313.1Re-query CCDS DB by GeneID:394435See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113137.1 ENSMUSP00000108762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113137.1Link to Ensembl Protein Viewer:ENSMUSP00000108762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113137Re-query CCDS DB by Protein ID:ENSMUSP00000108762
Original member Current member EBI ENSMUST00000113138.7 ENSMUSP00000108763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113138.7Link to Ensembl Protein Viewer:ENSMUSP00000108763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113138Re-query CCDS DB by Protein ID:ENSMUSP00000108763
Original member Current member NCBI NM_201410.3 NP_958812.3 Accepted alive Link to Nucleotide Sequence:NM_201410.3Link to Protein Sequence:NP_958812.3Re-query CCDS DB by Nucleotide ID:NM_201410Re-query CCDS DB by Protein ID:NP_958812Link to BLAST:NP_958812.3

Chromosomal Locations for CCDS 48313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88106942 88107799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215044 88215175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215795 88215882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88216138 88216357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88218127 88218424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGCTTGCCTTCTTCCTGCTGCTCAGACACTTCCTGCAGGGTTTCTCTTCCTAGTGCTTTGGGCCTCAG
TTCTAGGTGACAAGCTGCTGGTGGTCCCCCAGGATGGAAGCCACTGGCTTAGCATGAAGGAGATAGTGGA
GCATCTCAGTGAACGAGGACATGACATTGTGGTCCTAGTGCCAGAAGTCAATTTGCTTTTGGGAGAATCC
AAATACTACAGGAGGAAAATTTTCTCAGTTCCCTACAGCCTAGAAGAACTACAGACCCGTTTTCGCACCT
TTGGACGCAACCAGTTTGTTCCTGGTGCCCCCCTGATGGGTCCTCTAAGAGAGTACAGGAACAGCATGCT
TACATTGGAGATGTTCTTTTCCAACTGCCAGAGCCTCCTGAAGGACTCTGCCACCCTCAGCTTCCTCAGG
GAGAACAAGTTTGATGCTCTGTTCACAGACCCAGCCATGCCCTGTGGTGTGATCCTGGCTGAGTATCTCA
ACCTGCCCTCTGTCTACCTCTTCAGAGGTTTCCCATGCTCTCTGGAACACATGCTTGGTCAAAGCCCAAG
CCCTGTGTCCTATGTGCCCAGATTCTACACCAAATTCTCAGACCACATGACATTTCCCCAACGGCTGGCC
AACTTCATTGTTAACATCTTGGAAAACTACCTATATTATTGTCTGTATTCAAAGTATGAAATCATTGTCA
CAGACCTCCTCAAGAGAGATGTGTCCCTACCTTCCTTACACCAGAATTCTCTGTGGCTGTTACGGTACGA
TTTTGTGTTCGAATATCCCAGGCCAATCATGCCCAACATGATCTTCATTGGAGGGATCAACTGTAAGAAG
AAGGGAAAGCTGACTCAGGAATTTGAAGCCTATGTCAACGCCTCTGGGGAGCATGGCATCGTTGTTTTCT
CTTTGGGATCCATGGTCTCAGAGATTCCGGAGAAGAAAGCCATGGAAATTGCTGAGGCTTTGGGCAGAAT
TCCTCAGACGGTCCTGTGGCGCTACACCGGAACTAGACCATCGAATCTTGCAAAGAACACAATTCTTGTC
AAATGGCTACCCCAAAATGATCTGCTTGGTCATCCAAAGACTCGGGCATTCATCACACACTCTGGCTCCC
ATGGTATTTATGAAGGAATATGCAATGGAGTTCCGATGGTGATGATGCCCCTATTTGGCGATCAGATGGA
CAATGCCAAGCGCATGGAAACTCGGGGAGCTGGGGTGACCCTGAATGTCCTTGAAATGACTGCTGATGAT
TTGGAAAATGCCCTTAAAACTGTCATCAACAACAAGAGCTACAAGGAGAACATCATGCGCCTCTCCAGCC
TTCACAAGGACCGTCCTATAGAGCCTCTGGACCTGGCTGTGTTCTGGGTGGAATACGTGATGAGGCACAA
GGGGGCACCACACCTGCGCCCGGCCGCCCATGACCTCACCTGGTATCAGTACCACTCCTTGGATGTGATT
GGCTTCCTCCTGGCCATTGTGTTGACAGTGGTCTTCATTGTCTTTAAATGTTGTGCCTATGGCTGCCGGA
AATGCTTTGGGGGAAAGGGGCGAGTGAAGAAATCACACAAATCCAAGACCCATTGA

Translation (531 aa):
MACLLPAAQTLPAGFLFLVLWASVLGDKLLVVPQDGSHWLSMKEIVEHLSERGHDIVVLVPEVNLLLGES
KYYRRKIFSVPYSLEELQTRFRTFGRNQFVPGAPLMGPLREYRNSMLTLEMFFSNCQSLLKDSATLSFLR
ENKFDALFTDPAMPCGVILAEYLNLPSVYLFRGFPCSLEHMLGQSPSPVSYVPRFYTKFSDHMTFPQRLA
NFIVNILENYLYYCLYSKYEIIVTDLLKRDVSLPSLHQNSLWLLRYDFVFEYPRPIMPNMIFIGGINCKK
KGKLTQEFEAYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLWRYTGTRPSNLAKNTILV
KWLPQNDLLGHPKTRAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTADD
LENALKTVINNKSYKENIMRLSSLHKDRPIEPLDLAVFWVEYVMRHKGAPHLRPAAHDLTWYQYHSLDVI
GFLLAIVLTVVFIVFKCCAYGCRKCFGGKGRVKKSHKSKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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