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Report for CCDS48355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48355.1 Public Mus musculus 1 Srgap2 23 108 98 CCDS HistoryNCBI Gene:14270Re-query CCDS DB by CCDS ID:48355.1Re-query CCDS DB by GeneID:14270See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097588.8 ENSMUSP00000095195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097588.8Link to Ensembl Protein Viewer:ENSMUSP00000095195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097588Re-query CCDS DB by Protein ID:ENSMUSP00000095195
Original member Current member NCBI NM_001081011.2 NP_001074480.2 Accepted alive Link to Nucleotide Sequence:NM_001081011.2Link to Protein Sequence:NP_001074480.2Re-query CCDS DB by Nucleotide ID:NM_001081011Re-query CCDS DB by Protein ID:NP_001074480Link to BLAST:NP_001074480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074480.2 1071 Q91Z67 1071 100% 0 0

Chromosomal Locations for CCDS 48355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131289357 131289740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131292521 131292845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131296320 131296466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131298332 131298512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131300393 131300472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131310474 131310698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131317129 131317234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131319525 131319659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131320435 131320512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131325088 131325148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131332117 131332141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131333857 131333884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131336390 131336474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131344349 131344546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131345762 131345863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131349452 131349676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131355511 131355639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131356690 131356905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131364002 131364064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131411800 131411962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131436675 131436867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131524938 131525004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3216 nt):
ATGACGTCTCCAGCCAAATTCAAAAAGGATAAGGAGATCATCGCAGAGTACGATACTCAGGTCAAAGAGA
TTAGGGCTCAGCTCACAGAGCAGATGAAATGCCTAGATCAGCAATGTGAGCTCCGGGTGCAGCTGTTGCA
GGACCTGCAGGACTTCTTCCGCAAGAAGGCTGAGATTGAAATGGACTACTCTCGAAACCTGGAGAAGCTA
GCCGAGCGCTTTCTAGCCAAGACACGAAGCACCAAGGACCAGCAATTTAAGAAGGACCAGAATGTTCTTT
CTCCAGTCAACTGCTGGAACCTCCTCTTAAACCAAGTGAAGCGGGAGAGCAGGGATCATACCACCCTGAG
TGACATCTACCTGAATAATATAATTCCTCGATTTGTTCAAGTCAGCGAGGACTCAGGAAGACTCTTTAAA
AAGAGTAAAGAAGTTGGCCAGCAACTCCAAGATGATTTGATGAAAGTCCTGAACGAGCTTTACTCGGTCA
TGAAGACATATCACATGTACAATGCCGACAGCATCAGTGCTCAGAGCAAACTGAAGGAAGCAGAGAAACA
AGAAGAGAAGCAAATTGGCAAATCAGTAAAGCAAGAGGACCGGCAGACCCCTCGCTCCCCTGACTCCACA
GCCAATGTCCGCATTGAGGAGAAGCATGTCCGGAGGAGCTCAGTGAAGAAGATTGAGAAGATGAAGGAGA
AGCGACAAGCCAAGTACACAGAAAATAAGCTGAAGGCCATTAAAGCCCGGAATGAGTATTTATTGGCTTT
GGAGGCAACCAATGCATCTGTCTTCAAGTACTATATCCATGACCTGTCTGATATTATTGATCAATGTTGT
GACCTAGGCTACCATGCTAGCCTGAACCGGGCTCTACGCACTTTCCTATCTGCTGAATTAAATCTGGAAC
AGTCAAAACATGAAGGTCTGGATGCTATTGAAAATGCAGTAGAAAACCTAGATGCCACCAGTGACAAGCA
ACGGCTCATGGAGATGTACAACAATGTTTTTTGCCCCCCTATGAAATTTGAATTCCAGCCCCACATGGGA
GATATGGCCTCTCAACTCTGTGCCCAGCAGCCTGTCCAGAGTGAGCTGGTGCAGAGATGCCAACAGCTGC
AGTCTCGCTTATCCACTTTGAAGATTGAGAATGAAGAGGTGAAAAAGACAATGGAGGCCACCCTGCAGAC
CATTCAAGACATTGTGACTGTTGAGGATTTTGATGTATCTGACTGCTTCCAGTATAGCAATTCCATGGAG
TCTGTCAAATCAACTGTCTCTGAAACATTCATGAGCAAGCCCAGCATTGCTAAGAGGAGAGCGAACCAGC
AAGAGACGGAACAGTTTTATTTCACGAAAATGAAGGAGTACTTGGAGGGTAGGAACCTCATCACAAAGCT
ACAAGCCAAGCATGACCTCCTGCAGAAAACCCTGGGAGAAAGTCAGCGGACAGACTGTAGTCTTGCCAGG
CGAAGCTCAACTGTGAGGAAACAGGATTCCAGCCAAGCAATTCCTCTGGTGGTAGAAAGCTGCATCCGGT
TTATTAGCAGACATGGCCTACAACATGAGGGAATTTTCCGGGTTTCTGGATCACAAGTAGAAGTGAACGA
CATAAAAAACGCCTTTGAGAGAGGAGAGGATCCCCTGGCTGGGGACCAGAATGACCATGACATGGACTCT
ATAGCTGGTGTCCTCAAGCTTTACTTCCGGGGCCTGGAACACCCGCTCTTCCCTAAAGACATCTTCCATG
ACTTGATTGCCTGTGTCACAATGGACAACCTGCAAGAGAGAGCTGTGCATATCCGGAAAGTCCTTCTGGT
CCTGCCCAAGCCCACTCTGATTATCATGAGATATCTCTTTGCCTTCCTCAATCACTTATCACAGTTCAGT
GAAGAGAACATGATGGACCCCTACAACCTTGCCATCTGCTTCGGGCCCTCACTGATGTCAGTGCCAGAGG
GCCACGACCAGGTGTCCTGTCAAGCCCACGTGAATGAGCTGATCAAAACCATCATCATCCAACATGAGAA
CATTTTCCCAAACCCCAGGGAGCTGGAGGGTCCCATCTACAGCAGAGGAGGAAGCATGGAGGATTACTGT
GACAGCACTCATGGAGAGACTACCTCTGCTGAAGACTCCACCCAGGACGTTACAGCGGAGCACCACACAA
GCGATGATGAATGTGAGCCCATAGAAGCCATTGCCAAGTTTGACTACGTAGGCCGGACAGCCCGAGAACT
GTCTTTCAAGAAGGGAGCATCCCTGCTGCTCTACCAGCGAGCTTCTGATGACTGGTGGGAGGGCCGGCAC
AACGGTATAGATGGACTCATCCCCCATCAGTACATCGTAGTCCAAGACACCGAGGACGGTGTCGTGGAGA
GGTCCAGCCCCAAGTCTGAGATTGAGGTCATGTCTGAGCCACCTGAAGAAAAGGTGACAGCCAGAACGGG
GGCCAGCTGTCCCAGTGGGGGTCATGTAGCTGATATTTATCTTGCAAACATCAACAAGCAAAGGAAGCGT
CCAGAATCTGGGAGCATCAGAAAAGCATTTCGGAGTGACAGCCATGGGCTGGGCAGTTCTCTGACTGACT
CCTCCTCCCTGGGGGTGGGGGCTAGCTGCCGTCCATCCTCCCAGCCCATCATGAGCCAGAATCTCCCCAA
GGAAGGGCCAGATAAGTGTTCCATCAGCGGCCATGGCAGCCTCAACTCTATCAGCCGCCACTCATCCTTG
AAGAACCGGATGGACAGTCCGCAGATCCGGAAGACCGCTACGGCAGGAAGGTCAAAAAGTTTCAATAACC
ATCGGCCCATGGACCCTGAAGTCATTGCACAGGATATTGAAGCAACAATGAACTCTGCCCTGAATGAGCT
TCAAGAGCTAGAGCGGCAGAGCAGTGCTAAGCACACACCTGATGTGGTTCTGGACACCTTGGAACCACTC
AAGACCTCCCCGGTGGTAGCCCCCACATCTGAGCCCTCCAGCCCTCTGCACACCCAGCTCCTCAAGGACC
CTGAGCCTGCCTTCCAGCGCAGCGCTAGTACTGCTGGGGACATTGCCTGCGCCTTCCGGCCTGTAAAGTC
TGTCAAGATGGCTGCTCCAGTCAAACCACCAGCCACACGGCCCAAGCCAACTGTCTTCCCCAAAACAAAC
GCCACTAGCCCTGGTGTCAATTCATCTGCTTCCCCACAGGCCACTGACAAGTCTTGTACTGTCTAA

Translation (1071 aa):
MTSPAKFKKDKEIIAEYDTQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKL
AERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRLFK
KSKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEKQEEKQIGKSVKQEDRQTPRSPDST
ANVRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLALEATNASVFKYYIHDLSDIIDQCC
DLGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENLDATSDKQRLMEMYNNVFCPPMKFEFQPHMG
DMASQLCAQQPVQSELVQRCQQLQSRLSTLKIENEEVKKTMEATLQTIQDIVTVEDFDVSDCFQYSNSME
SVKSTVSETFMSKPSIAKRRANQQETEQFYFTKMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLAR
RSSTVRKQDSSQAIPLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDS
IAGVLKLYFRGLEHPLFPKDIFHDLIACVTMDNLQERAVHIRKVLLVLPKPTLIIMRYLFAFLNHLSQFS
EENMMDPYNLAICFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNPRELEGPIYSRGGSMEDYC
DSTHGETTSAEDSTQDVTAEHHTSDDECEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH
NGIDGLIPHQYIVVQDTEDGVVERSSPKSEIEVMSEPPEEKVTARTGASCPSGGHVADIYLANINKQRKR
PESGSIRKAFRSDSHGLGSSLTDSSSLGVGASCRPSSQPIMSQNLPKEGPDKCSISGHGSLNSISRHSSL
KNRMDSPQIRKTATAGRSKSFNNHRPMDPEVIAQDIEATMNSALNELQELERQSSAKHTPDVVLDTLEPL
KTSPVVAPTSEPSSPLHTQLLKDPEPAFQRSASTAGDIACAFRPVKSVKMAAPVKPPATRPKPTVFPKTN
ATSPGVNSSASPQATDKSCTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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