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Report for CCDS48356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48356.1 Public Mus musculus 1 Nucks1 23 108 98 CCDS HistoryNCBI Gene:98415Re-query CCDS DB by CCDS ID:48356.1Re-query CCDS DB by GeneID:98415See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062264.7 ENSMUSP00000062576.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062264.7Link to Ensembl Protein Viewer:ENSMUSP00000062576.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062264Re-query CCDS DB by Protein ID:ENSMUSP00000062576
Original member Current member NCBI NM_175294.3 NP_780503.2 Accepted alive Link to Nucleotide Sequence:NM_175294.3Link to Protein Sequence:NP_780503.2Re-query CCDS DB by Nucleotide ID:NM_175294Re-query CCDS DB by Protein ID:NP_780503Link to BLAST:NP_780503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780503.2 234 Q80XU3 234 100% 0 0

Chromosomal Locations for CCDS 48356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131910734 131910750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131919005 131919054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131921943 131922048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131924586 131924641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131928064 131928216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131929613 131929762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131931034 131931206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTCTCGGCCTGTCAGAAATAGGAAGGTTGTGGATTACTCTCAGTTTCAGGAATCAGATGATGCAGATG
AAGATTATGGAAGAGATTCAGGCCCTCCTGCTAAGAAGATTCGGTCATCTCCCCGAGAGGCTAAAAATAA
GAGGCGATCTGGAAAAAATTCACAAGAAGACAGTGAAGACTCAGAAGAAAAAGATGTGAAGACCAAGAAG
GATGATTCTCACTCGGCAGAAGACAGCGAAGATGAAAAAGATGATCATAAAAATGTACGCCAGCAACGAC
AGGCAGCATCTAAAGCAGCTTCTAAGCAGAGAGAGATGCTCTTGGAAGATGTTGGCAGCGAGGAAGAGCC
GGAAGAAGATGATGAGGCGCCATTCCAGGAGAAAGATTCTGGCAGCGATGAAGATTTCCTAATGGAAGAC
GACGATGATAGTGATTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCCAAACCTGAGA
GAAAAGAAAAGAAAATGCCCAAACCCAGACTAAAGGCAACAGTGACGCCAAGTCCAGTGAAAGGCAAAGC
GAAAGTGGGTCGCCCCACAGCTTCGAAGAAATCAAAGGAAAAAACTCCTTCTCCCAAAGAAGAGGATGAG
GAAGCAGAAAGCCCTCCAGAAAAGAAGTCCGGAGACGAAGGGTCCGAGGATGAAGCCTCATCTGGGGAAG
ATTAA

Translation (234 aa):
MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPAKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKK
DDSHSAEDSEDEKDDHKNVRQQRQAASKAASKQREMLLEDVGSEEEPEEDDEAPFQEKDSGSDEDFLMED
DDDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTPSPVKGKAKVGRPTASKKSKEKTPSPKEEDE
EAESPPEKKSGDEGSEDEASSGED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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