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Report for CCDS48357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48357.1 Public Mus musculus 1 Mfsd4a 23 108 98 CCDS HistoryNCBI Gene:213006Re-query CCDS DB by CCDS ID:48357.1Re-query CCDS DB by GeneID:213006See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159038.7 ENSMUSP00000125558.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159038.7Link to Ensembl Protein Viewer:ENSMUSP00000125558.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159038Re-query CCDS DB by Protein ID:ENSMUSP00000125558
Original member Current member NCBI NM_001114662.1 NP_001108134.1 Accepted alive Link to Nucleotide Sequence:NM_001114662.1Link to Protein Sequence:NP_001108134.1Re-query CCDS DB by Nucleotide ID:NM_001114662Re-query CCDS DB by Protein ID:NP_001108134Link to BLAST:NP_001108134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108134.1 510 Q6PDC8-1 510 100% 0 0

Chromosomal Locations for CCDS 48357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 132038918 132038973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132040540 132040660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132041858 132041928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132046306 132046453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132052380 132052553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132053549 132053664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132054059 132054224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132057716 132057967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132059160 132059358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132067663 132067892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGGCTGCGACGGCCGGGTGTCTGAGCTGCTCCGCCGCAACCTACAGCCCACGCTCACCTACTGGAGCG
TCTTCTTCAGCTTCGGCCTGTGCATCGCCTTCCTGGGGCCCACGCTTCTGGACCTGCGCTGCCAGACGCA
CAGCTCGTTGCCCCAGATCTCCTGGGTCTTCTTCTCGCAGCAGCTCTGCCTCCTGCTGGGCAGCGCCCTC
GGGGGTGTCTTCAAGAGGACCCTGGCCCAGTCGTTATGGGCCCTCTTCACCTCTACCCTGGTCATCTCCC
TGGTTTTTGCTGTCATCCCCTTCTGCCATGACGTGAAGGTATTGGCCTCGGTCATAGCGCTGGCGGGCCT
GGCCATGGGCTGCATCGACACCGTGGCCAACATGCAGTTGGTGAGGATATACCAGAAGGACTCAGCCTTC
TTCCTTCAGGTCCTTCATTTCTTCGTGGGCCTTGGTGCTCTGCTGAGCCCCCTGATTGCGGACCCCTTCC
TGTCAGAGGCCAACTGCTTTCCTGCTAATAACACAGCCAATGCCACCTCCAGAAGCCATGGATCCCGGGT
CCTGAGCCAACATCACGCAGCAGCCCAGCCTTGGATAAACCAGACGATCCCCAGGCTGCCCCCAAAGGAG
GTGACCGAGAACCACGTATCCTATGCCTTCTGGATCATGGCTCTCATCAATCTCCCAGTGCCCCTGGCTG
TTCTGTTCCTGCTGTCCAAGGAGCGGCTGCTGACCTGCGCTCAGAGGAAGCCACTGCTCCTGTCTGCGGA
TGAGCTTGCACTGGAGACCCGGCCTGCTGAGAAGGAAGACACCTCCTCACTTGCCCCCAAGTTTCAGCCA
CACTCAGGGCAGGAGGACCTGTTCAGCTGCTGCCAGAGGAAGAACTTCCGGGGAGCCCCGTGCTCTTTCT
TCGCCATCCACATCACGGCAGCTCTGGTCCTGTTCATGACAGACGGGATGATGGGCGCTTATTCGGCCTT
TGTGTACAGCTATGCTGTGGAGAAGCCGCTCTCTATTGGACACAAGTCAGCTGGTTACCTCCCTAGCCTC
TTCTGGGGTTTCATCACTCTGGGCAGGTTCATCTCCATCCCAGTCTCCTCAAGAATGAGGCCAGCCACCA
TGGTGTTCATCAATGTGGTGGGAGTGGTGGTGACCTTCCTGATGCTGCTTATCTTCTCCTACAATGTCAT
CTTCCTGTTTGTGGGGACCGCAAGCCTGGGGCTGTTTCTCAGTAGCACCTTCCCCAGTATGCTGGCCTAC
ACCGAGGACATCCTCCAGTATAAAGGTTGTGCGACCACAGTGCTGGTGACTGGGGCAGGCATTGGCGAGA
TGGTCCTGCAGATGCTGGTTGGCTTGATCTTTCAGGCCCAGGGCAGTTACAGTTTCCTGGTCTGTGGTGT
GATCTTTGGCTGCCTGGCTTTTATCTTCTACATCTTGCTCCTGTTTTTCCACAGGATACACCCTGAACTC
TCATCAGTTCTTACCCAAGACAAAGCCCTTGGTGTGGAGAACCCTGAGTGCTACCAGAGGTGA

Translation (510 aa):
MGCDGRVSELLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSAL
GGVFKRTLAQSLWALFTSTLVISLVFAVIPFCHDVKVLASVIALAGLAMGCIDTVANMQLVRIYQKDSAF
FLQVLHFFVGLGALLSPLIADPFLSEANCFPANNTANATSRSHGSRVLSQHHAAAQPWINQTIPRLPPKE
VTENHVSYAFWIMALINLPVPLAVLFLLSKERLLTCAQRKPLLLSADELALETRPAEKEDTSSLAPKFQP
HSGQEDLFSCCQRKNFRGAPCSFFAIHITAALVLFMTDGMMGAYSAFVYSYAVEKPLSIGHKSAGYLPSL
FWGFITLGRFISIPVSSRMRPATMVFINVVGVVVTFLMLLIFSYNVIFLFVGTASLGLFLSSTFPSMLAY
TEDILQYKGCATTVLVTGAGIGEMVLQMLVGLIFQAQGSYSFLVCGVIFGCLAFIFYILLLFFHRIHPEL
SSVLTQDKALGVENPECYQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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