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Report for CCDS48383.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48383.2 Public Mus musculus 1 Ptprc 23 108 98 CCDS HistoryNCBI Gene:19264Re-query CCDS DB by CCDS ID:48383.2Re-query CCDS DB by GeneID:19264See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 48383.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48383.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183301.7 ENSMUSP00000138350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183301.7Link to Ensembl Protein Viewer:ENSMUSP00000138350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183301Re-query CCDS DB by Protein ID:ENSMUSP00000138350
Original member NCBI NM_001111316.2 NP_001104786.2 Updated not alive Link to Nucleotide Sequence:NM_001111316.2Link to Protein Sequence:NP_001104786.2Re-query CCDS DB by Nucleotide ID:NM_001111316Re-query CCDS DB by Protein ID:NP_001104786
Current member NCBI NM_001111316.3 NP_001104786.2 Accepted alive Link to Nucleotide Sequence:NM_001111316.3Link to Protein Sequence:NP_001104786.2Re-query CCDS DB by Nucleotide ID:NM_001111316Re-query CCDS DB by Protein ID:NP_001104786Link to BLAST:NP_001104786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104786.2 1293 P06800-4 1293 100% 0 0

Chromosomal Locations for CCDS 48383.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138064506 138064778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138066088 138066223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138067886 138068061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138068312 138068434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138071137 138071271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138072257 138072390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138073604 138073694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138078446 138078595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138080135 138080270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138080837 138080994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138082636 138082761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138083563 138083660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138083747 138083783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138088503 138088579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138088667 138088757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138089495 138089604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138092199 138092233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138092896 138093004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138094242 138094302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138099483 138099691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138101042 138101197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138107775 138107909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138111152 138111310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138112191 138112331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138113564 138113779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138115619 138115642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138116954 138117025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138117754 138117894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138120020 138120166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138122456 138122584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138126303 138126326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138175015 138175087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3882 nt):
ATGACCATGGGTTTGTGGCTCAAACTTCTGGCCTTTGGATTTGCCCTTCTGGACACAGAAGTCTTTGTCA
CAGGGCAAACACCTACACCCAGTGATGAACTGAGCACAACAGAGAATGCCCTTCTTCTGCCTCAAAGTGA
CCCCTTACCTGCTCGCACCACTGAATCCACACCCCCAAGCATCTCTGAAAGAGGAAATGGCTCTTCAGAG
ACCACATATCATCCAGGTGTGTTATCCACGCTGCTGCCTCACCTGTCCCCACAGCCTGACTCGCAGACGC
CCTCTGCCGGAGGAGCTGACACTCAGACATTCAGCAGCCAAGCTGACAATCCCACACTCACGCCTGCTCC
CGGCGGCGGGACTGACCCACCAGGTGTGCCAGGGGAGAGGACTGTACCGGGGACCATTCCTGCAGACACA
GCCTTTCCTGTTGATACCCCCAGCCTTGCACGCAACAGCTCTGCTGCCTCACCTACACACACCTCCAATG
TCAGCACCACAGATATCTCTTCAGGTGCCAGCCTCACAACTCTTACACCATCCACTCTGGGCCTTGCAAG
CACTGACCCTCCAAGCACAACCATAGCTACCACAACGAAGCAAACATGTGCTGCCATGTTTGGGAACATT
ACTGTGAATTACACCTATGAATCTAGTAATCAGACTTTTAAGGCAGACCTCAAAGATGTCCAAAATGCTA
AGTGTGGAAATGAGGATTGTGAAAACGTGTTAAATAATCTAGAAGAATGCTCACAGATAAAAAACATCAG
TGTGTCTAATGACTCATGTGCTCCAGCTACAACTATAGATTTATATGTACCACCAGGGACTGACAAGTTT
TCGCTACATGACTGCACACCAAAAGAAAAGGCTAATACTTCAATTTGTTTGGAGTGGAAAACAAAAAACC
TTGATTTCAGAAAATGCAACAGTGACAATATTTCATATGTACTCCACTGTGAGCCAGAAAATAATACAAA
ATGCATTAGAAGAAATACATTCATACCTGAAAGATGTCAGTTGGACAACCTTCGTGCCCAAACAAATTAC
ACATGTGTAGCAGAAATCTTATATCGCGGTGTAAAACTCGTCAAAAATGTTATAAATGTGCAGACAGATT
TGGGGATTCCAGAAACGCCTAAGCCTAGTTGTGGGGATCCAGCTGCAAGAAAAACGTTAGTCTCTTGGCC
TGAGCCTGTATCTAAACCTGAGTCTGCATCTAAACCCCATGGATATGTTTTATGCTATAAGAACAATTCA
GAAAAATGTAAAAGTTTGCCTAATAATGTGACCAGTTTTGAGGTGGAAAGCTTGAAACCTTATAAATACT
ATGAAGTGTCCCTACTTGCCTATGTCAATGGGAAGATTCAAAGAAATGGGACTGCTGAGAAGTGCAATTT
TCACACAAAAGCAGATCGTCCGGACAAGGTCAATGGAATGAAAACCTCCCGGCCGACAGACAATAGTATA
AATGTTACATGTGGTCCTCCTTATGAAACTAATGGCCCTAAAACCTTTTACATTTTGGTAGTCAGAAGTG
GAGGTTCTTTTGTTACAAAATACAACAAGACAAACTGTCAGTTTTATGTAGATAATCTCTACTATTCAAC
TGACTATGAGTTTCTGGTCTCTTTTCACAATGGAGTGTACGAGGGAGATTCAGTTATAAGAAATGAGTCA
ACAAATTTTAATGCTAAAGCACTGATTATATTCCTGGTGTTTCTGATTATTGTGACATCAATAGCCTTGC
TTGTTGTTTTGTATAAAATCTATGATCTGCGCAAGAAAAGATCCAGCAATTTAGATGAACAACAGGAACT
CGTTGAAAGGGATGATGAAAAGCAGCTGATGGATGTGGAGCCAATCCATTCTGACATTTTGTTGGAAACA
TACAAAAGGAAGATTGCTGATGAGGGCAGACTGTTCCTGGCTGAATTTCAGAGCATTCCACGGGTATTCA
GCAAGTTTCCCATCAAAGATGCCCGAAAGCCCCACAATCAGAATAAAAACCGTTATGTTGACATTCTTCC
CTATGATTATAACCGTGTGGAACTCTCTGAAATAAATGGAGATGCAGGGTCCACCTACATAAATGCCAGC
TACATTGATGGCTTCAAGGAACCCAGGAAATACATTGCTGCACAAGGGCCCCGGGATGAGACAGTTGATG
ACTTCTGGAGGATGATCTGGGAGCAAAAGGCCACAGTTATTGTCATGGTCACACGATGTGAAGAAGGAAA
CAGGAACAAGTGCGCAGAATACTGGCCAAGCATGGAGGAAGGCACTCGGGCTTTCAAAGATATTGTTGTG
ACAATCAATGACCACAAACGATGTCCTGATTACATCATTCAGAAGCTGAACGTTGCACATAAAAAAGAAA
AAGCAACTGGAAGAGAAGTGACTCATATCCAATTCACCAGCTGGCCAGACCATGGGGTTCCTGAAGACCC
TCACCTGCTCCTCAAACTTCGACGGAGAGTTAATGCTTTTAGCAACTTCTTCAGTGGTCCCATTGTGGTG
CACTGCAGTGCTGGTGTTGGGCGTACAGGTACCTACATTGGAATTGATGCCATGCTGGAAGGCCTGGAAG
CAGAGGGCAAAGTGGATGTCTATGGTTATGTTGTCAAGCTAAGGCGACAGAGGTGTCTGATGGTGCAAGT
GGAGGCACAGTATATCCTGATTCATCAGGCTTTAGTGGAATACAATCAGTTTGGAGAAACAGAAGTGAAC
TTGTCTGAGTTACATTCATGCCTACACAACATGAAGAAGAGAGATCCACCCAGTGACCCCTCCCCTCTGG
AGGCTGAATACCAGAGACTTCCTTCATACAGGAGTTGGAGGACACAGCACATTGGAAATCAAGAAGAAAA
TAAGAAGAAGAACAGGAATTCTAATGTTGTTCCATATGACTTTAACAGAGTGCCACTTAAGCATGAACTG
GAGATGAGCAAAGAGAGTGAGCCTGAATCAGATGAGTCTTCAGATGATGACAGTGACTCAGAAGAAACCA
GCAAATACATTAATGCATCCTTTGTGATGAGTTACTGGAAACCAGAAATGATGATTGCTGCTCAGGGGCC
ACTAAAAGAAACGATCGGTGACTTTTGGCAGATGATATTCCAAAGAAAAGTCAAAGTTATTGTGATGTTG
ACAGAGTTAGTGAATGGAGACCAGGAAGTCTGTGCTCAGTACTGGGGCGAAGGAAAGCAGACTTATGGAG
ACATGGAAGTGGAGATGAAAGACACAAACAGAGCCTCAGCCTACACTCTCCGAACTTTTGAGCTGAGACA
TTCCAAGAGGAAGGAGCCCAGAACTGTGTACCAGTACCAGTGTACCACATGGAAAGGGGAAGAGCTGCCT
GCAGAACCCAAAGACCTGGTGTCTATGATTCAGGACCTCAAACAGAAGCTTCCCAAGGCTTCCCCAGAAG
GGATGAAGTATCACAAGCATGCATCCATCCTCGTCCACTGCAGAGATGGATCCCAGCAGACAGGGTTGTT
CTGTGCCTTGTTCAATCTCTTGGAAAGTGCAGAAACAGAAGATGTGGTTGATGTTTTCCAAGTGGTAAAG
TCTCTACGCAAAGCACGGCCTGGGGTGGTGTGCAGCTATGAGCAATACCAGTTCCTCTATGACATCATCG
CCAGCATCTATCCCGCCCAGAATGGACAAGTCAAGAAAACAAACAGCCAAGACAAAATTGAATTTCATAA
TGAAGTGGATGGAGGCAAGCAGGATGCTAACTGTGTCCGTCCAGATGGTCCTCTGAATAAAGCCCAGGAA
GACAGCAGAGGGGTGGGAACCCCGGAGCCTACCAATAGTGCTGAGGAACCAGAACATGCTGCCAATGGTT
CTGCGAGCCCAGCTCCAACCCAGAGTTCATAG

Translation (1293 aa):
MTMGLWLKLLAFGFALLDTEVFVTGQTPTPSDELSTTENALLLPQSDPLPARTTESTPPSISERGNGSSE
TTYHPGVLSTLLPHLSPQPDSQTPSAGGADTQTFSSQADNPTLTPAPGGGTDPPGVPGERTVPGTIPADT
AFPVDTPSLARNSSAASPTHTSNVSTTDISSGASLTTLTPSTLGLASTDPPSTTIATTTKQTCAAMFGNI
TVNYTYESSNQTFKADLKDVQNAKCGNEDCENVLNNLEECSQIKNISVSNDSCAPATTIDLYVPPGTDKF
SLHDCTPKEKANTSICLEWKTKNLDFRKCNSDNISYVLHCEPENNTKCIRRNTFIPERCQLDNLRAQTNY
TCVAEILYRGVKLVKNVINVQTDLGIPETPKPSCGDPAARKTLVSWPEPVSKPESASKPHGYVLCYKNNS
EKCKSLPNNVTSFEVESLKPYKYYEVSLLAYVNGKIQRNGTAEKCNFHTKADRPDKVNGMKTSRPTDNSI
NVTCGPPYETNGPKTFYILVVRSGGSFVTKYNKTNCQFYVDNLYYSTDYEFLVSFHNGVYEGDSVIRNES
TNFNAKALIIFLVFLIIVTSIALLVVLYKIYDLRKKRSSNLDEQQELVERDDEKQLMDVEPIHSDILLET
YKRKIADEGRLFLAEFQSIPRVFSKFPIKDARKPHNQNKNRYVDILPYDYNRVELSEINGDAGSTYINAS
YIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFKDIVV
TINDHKRCPDYIIQKLNVAHKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVV
HCSAGVGRTGTYIGIDAMLEGLEAEGKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVN
LSELHSCLHNMKKRDPPSDPSPLEAEYQRLPSYRSWRTQHIGNQEENKKKNRNSNVVPYDFNRVPLKHEL
EMSKESEPESDESSDDDSDSEETSKYINASFVMSYWKPEMMIAAQGPLKETIGDFWQMIFQRKVKVIVML
TELVNGDQEVCAQYWGEGKQTYGDMEVEMKDTNRASAYTLRTFELRHSKRKEPRTVYQYQCTTWKGEELP
AEPKDLVSMIQDLKQKLPKASPEGMKYHKHASILVHCRDGSQQTGLFCALFNLLESAETEDVVDVFQVVK
SLRKARPGVVCSYEQYQFLYDIIASIYPAQNGQVKKTNSQDKIEFHNEVDGGKQDANCVRPDGPLNKAQE
DSRGVGTPEPTNSAEEPEHAANGSASPAPTQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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